BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa

Shahin Arwa,van Kaauwen Martijn,Esselink Danny,Bargsten Joachim W

Functional genomics of fuzzless-lintless mutant of Gossypium hirsutum L. cv. MCU5 reveal key genes and pathways involved in cotton fibre initiation and elongation

Padmalatha Kethireddy Venkata,Patil Deepak P,Kumar Krishan,Dhandapani Gurusamy

Heat shock transcriptional factors in Malus domestica: identification, classification and expression analysis

Giorno Filomena,Guerriero Gea,Baric Sanja,Mariani Celestina

Genetic linkage maps for Asian and American lotus constructed using novel SSR markers derived from the genome of sequenced cultivar

Yang Mei,Han Yanni,VanBuren Robert,Ming Ray

Transcriptomic analysis of the red seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta) and its microbiome

de Oliveira Louisi,Gregoracci Gustavo,Silva Genivaldo Gueiros,Salgado Leonardo

An integrative analysis of cellular contexts, miRNAs and mRNAs reveals network clusters associated with antiestrogen-resistant breast cancer cells

Nam Seungyoon,Long Xinghua,Kwon ChangHyuk,Kim Sun

Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production

Butler Jessica E,Young Nelson D,Aklujkar Muktak,Lovley Derek R

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

Ashrafi Hamid,Hill Theresa,Stoffel Kevin,Kozik Alexander

Time course gene expression profiling of yeast spore germination reveals a network of transcription factors orchestrating the global response

Geijer Cecilia,Pirkov Ivan,Vongsangnak Wanwipa,Ericsson Abraham

Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information

Zhao Liang,Yuanda Lv,Caiping Cai,Xiangchao Tong

Transcriptome database resource and gene expression atlas for the rose

Dubois Annick,Carrere Sebastien,Raymond Olivier,Pouvreau Benjamin

Genomic resources for a model in adaptation and speciation research: characterization of the Poecilia mexicana transcriptome

Kelley Joanna L,Passow Courtney N,Plath Martin,Rodriguez Lenin Arias

Identifying breast cancer risk loci by global differential allele-specific expression (DASE) analysis in mammary epithelial transcriptome

Gao Chuan,Devarajan Karthik,Zhou Yan,Slater Carolyn M

Global endometrial transcriptomic profiling: transient immune activation precedes tissue proliferation and repair in healthy beef cows

Foley Cathriona,Chapwanya Aspinas,Creevey Christopher J,Narciandi Fernando

Targeted enrichment of the black cottonwood (Populus trichocarpa) gene space using sequence capture

Zhou Lecong,Holliday Jason A

Characterization of a transcriptome from a non-model organism, Cladonia rangiferina, the grey reindeer lichen, using high-throughput next generation sequencing and EST sequence data

Junttila Sini,Rudd Stephen

Cell population-specific expression analysis of human cerebellum

Kuhn Alexandre,Kumar Azad,Beilina Alexandra,Dillman Allissa

Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)

Lu Hsiao-Pei,Wang Yu-bin,Huang Shiao-Wei,Lin Chung-Yen

Tracing genomic variations in two highly virulent Yersinia enterocolitica strains with unequal ability to compete for host colonization

Garzetti Debora,Bouabe Hicham,Heesemann Juergen,Rakin Alexander

Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

Pieretti Isabelle,Royer Monique,Barbe Valérie,Carrere Sébastien

Transcriptional and metabolomic analysis of Ascophyllum nodosum mediated freezing tolerance in Arabidopsis thaliana

Nair Prasanth,Kandasamy Saveetha,Zhang Junzeng,Ji Xiuhong

Molecular evidence for the bi-clonal origin of neuroendocrine tumor derived metastases

Rinner Beate,Gallè Birgit,Trajanoski Slave,Fischer Carina

Combining laser microdissection and RNA-seq to chart the transcriptional landscape of fungal development

Teichert Ines,Wolff Gabriele,Kück Ulrich,Nowrousian Minou

Effects of immunostimulation on social behavior, chemical communication and genome-wide gene expression in honey bee workers (Apis mellifera)

Richard Freddie-Jeanne,Holt Holly L,Grozinger Christina M

iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets

Wei Yingying,Li Xia,Wang Qian-fei,Ji Hongkai

Identification of proteins binding coding and non-coding human RNAs using protein microarrays

Siprashvili Zurab,Webster Dan E,Kretz Markus,Johnston Danielle

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

Joardar Vinita,Abrams Natalie F,Hostetler Jessica,Paukstelis Paul J

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome

Santos Anderson R,Carneiro Adriana,Gala-García Alfonso,Pinto Anne

2009 pandemic H1N1 influenza virus elicits similar clinical course but differential host transcriptional response in mouse, macaque, and swine infection models

Go Jennifer T,Belisle Sarah E,Tchitchek Nicolas,Tumpey Terrence M

CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data

Shoemaker Jason E,Lopes Tiago JS,Ghosh Samik,Matsuoka Yukiko

A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences

Boulund Fredrik,Johnning Anna,Pereira Mariana Buongermino,Larsson DG Joakim

Mining and characterization of ubiquitin E3 ligases expressed in the mouse testis

Hou Xiaojun,Zhang Wei,Xiao Zhenyu,Gan Haiyun

Next generation sequencing and de novo transcriptome analysis of Costus pictus D. Don, a non-model plant with potent anti-diabetic properties

Annadurai Ramasamy S,Jayakumar Vasanthan,Mugasimangalam Raja C,Katta Mohan AVSK

Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya

Aryal Rishi,Yang Xiaozeng,Yu Qingyi,Sunkar Ramanjulu

An efficient RNA interference screening strategy for gene functional analysis

Chang Chih-Hung,Wang Hsiang-Iu,Lu Hsiang-Chia,Chen Cheng-En

Complete sequence of heterogenous-composition mitochondrial genome (Brassica napus) and its exogenous source

Wang Juan,Jiang Jinjin,Li Xiaoming,Li Aimin

Genome-wide association study for T lymphocyte subpopulations in swine

Lu Xin,Fu Wei-Xuan,Luo Yan-Ru,Ding Xiang-Dong

Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans

Donkor Eric S,Stabler Richard A,Hinds Jason,Adegbola Richard A

MicroRNAs and cardiac sarcoplasmic reticulum calcium ATPase-2 in human myocardial infarction: expression and bioinformatic analysis

Bo？tjan？i？ Emanuela,Zidar Nina,Glava？ Damjan

Population and sex differences in Drosophila melanogaster brain gene expression

Catalán Ana,Hutter Stephan,Parsch John

Transcriptome classification reveals molecular subtypes in psoriasis

Ainali Chrysanthi,Valeyev Najl,Perera Gayathri,Williams Andrew

The unique architecture and function of cellulose-interacting proteins in oomycetes revealed by genomic and structural analyses

Larroque Mathieu,Barriot Roland,Bottin Arnaud,Barre Annick

CPU-GPU hybrid accelerating the Zuker algorithm for RNA secondary structure prediction applications

Lei Guoqing,Dou Yong,Wan Wen,Xia Fei

Analysis of TIR- and non-TIR-NBS-LRR disease resistance gene analogous in pepper: characterization, genetic variation, functional divergence and expression patterns

Wan Hongjian,Yuan Wei,Ye Qingjing,Wang Rongqing

Novel type of linear mitochondrial genomes with dual flip-flop inversion system in apicomplexan parasites, Babesia microti and Babesia rodhaini

Hikosaka Kenji,Tsuji Naotoshi,Watanabe Yoh-ichi,Kishine Hiroe

Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms

Chen Jun,Uebbing Severin,Gyllenstrand Niclas,Lagercrantz Ulf

A REST derived gene signature stratifies glioblastomas into chemotherapy resistant and responsive disease

Wagoner Matthew P,Roopra Avtar

Comparative genomics and transcriptomics of trait-gene association

Pierlé Sebastián,Dark Michael J,Dahmen Dani,Palmer Guy H

How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?

Haas Brian J,Chin Melissa,Nusbaum Chad,Birren Bruce W

Intra-genomic GC heterogeneity in sauropsids: evolutionary insights from cDNA mapping and GC3 profiling in snake

Matsubara Kazumi,Kuraku Shigehiro,Tarui Hiroshi,Nishimura Osamu

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