BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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A BAC-based physical map of the Nile tilapia genome

Takayuki Katagiri, Celeste Kidd, Elizabeth Tomasino, Jesse T Davis, Cassandra Wishon, Justin E Stern, Karen L Carleton, Aimee E Howe, Thomas D Kocher

Comparative analysis of expression of histone H2a genes in mouse

Hiromi Nishida, Takahiro Suzuki, Hiroki Ookawa, Yasuhiro Tomaru, Yoshihide Hayashizaki

Reverse transcriptional profiling: non-correspondence of transcript level variation and proximal promoter polymorphism

Rebecca Brown, Martin E Feder

Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method

Craig Burgler, Paul M Macdonald

cGMP-independent nitric oxide signaling and regulation of the cell cycle

Xiaolin Cui, Jianhua Zhang, Penglin Ma, Daniela E Myers, Ilana G Goldberg, Kelly J Sittler, Jennifer J Barb, Peter J Munson, Ana Cintron, J Philip McCoy, Shuibang Wang, Robert L Danner

Proposed methods for testing and selecting the ERCC external RNA controls

External RNA Controls Consortium

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data

Matthew J Huentelman, David W Craig, Albert D Shieh, Jason J Corneveaux, Diane Hu-Lince, John V Pearson, Dietrich A Stephan

Limitations of mRNA amplification from small-size cell samples

Vigdis Nygaard, Marit Holden, Anders L？land, Mette Langaas, Ola Myklebost, Eivind Hovig

Sal-Site: Integrating new and existing ambystomatid salamander research and informational resources

Jeramiah J Smith, Srikrishna Putta, John A Walker, D Kump, Amy K Samuels, James R Monaghan, David W Weisrock, Chuck Staben, S Voss

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes

Soohyun Lee, Isaac Kohane, Simon Kasif

Osteo-Promoter Database (OPD) – Promoter analysis in skeletal cells

Inbal Grienberg, Dafna Benayahu

Genomic organization, annotation, and ligand-receptor inferences of chicken chemokines and chemokine receptor genes based on comparative genomics

Jixin Wang, David L Adelson, Ahmet Yilmaz, Sing-Hoi Sze, Yuan Jin, James J Zhu

A method for accurate detection of genomic microdeletions using real-time quantitative PCR

Rosanna Weksberg, Simon Hughes, Laura Moldovan, Anne S Bassett, Eva WC Chow, Jeremy A Squire

The angiotensin-converting enzyme (ACE) gene family of Anopheles gambiae

Susan Burnham, Judith A Smith, Alison J Lee, R Elwyn Isaac, Alan D Shirras

The complete mitochondrial genome of the stomatopod crustacean Squilla mantis

Charles E Cook

Cross genome phylogenetic analysis of human and Drosophila G protein-coupled receptors: application to functional annotation of orphan receptors

Raghu Metpally, Ramanathan Sowdhamini

Comparative genome analysis of cortactin and HS1: the significance of the F-actin binding repeat domain

Agnes GSH van Rossum, Ellen Schuuring-Scholtes, Vera Seggelen, Philip M Kluin, Ed Schuuring

CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences

Victor Guryev, Eugene Berezikov, Edwin Cuppen

Identification and characterization of the fibrinogen-like domain of fibrinogen-related proteins in the mosquito, Anopheles gambiae, and the fruitfly, Drosophila melanogaster, genomes

Xinguo Wang, Qin Zhao, Bruce M Christensen

Dual activation of pathways regulated by steroid receptors and peptide growth factors in primary prostate cancer revealed by Factor Analysis of microarray data

Juan Lozano, Marta Soler, Raquel Bermudo, David Abia, Pedro L Fernandez, Timothy M Thomson, Angel R Ortiz

Microarray analysis of gene expression profiles of cardiac myocytes and fibroblasts after mechanical stress, ionising or ultraviolet radiation

Marjan Boerma, Caroline GC van der Wees, Harry Vrieling, J Peter Svensson, Jan Wondergem, Arnoud van der Laarse, Leon HF Mullenders, Albert A van Zeeland

Structure and evolution of the mouse pregnancy-specific glycoprotein (Psg) gene locus

Andrew S McLellan, Beate Fischer, Gabriela Dveksler, Tomomi Hori, Freda Wynne, Melanie Ball, Katsuzumi Okumura, Tom Moore, Wolfgang Zimmermann

Genome-scale analysis of positional clustering of mouse testis-specific genes

Quan Li, Bernett TK Lee, Louxin Zhang

Construction of a radiation hybrid map of chicken chromosome 2 and alignment to the chicken draft sequence

Sophie Leroux, Mélanie Dottax, Suzanne Bardes, Florence Vignoles, Katia Fève, Frédérique Pitel, Mireille Morisson, Alain Vignal

Characterization of the global profile of genes expressed in cervical epithelium by Serial Analysis of Gene Expression (SAGE)

Carlos Pérez-Plasencia, Gregory Riggins, Guelaguetza Vázquez-Ortiz, José Moreno, Hugo Arreola, Alfredo Hidalgo, Patricia Pi？a-Sanchez, Mauricio Salcedo

Effect of dataset selection on the topological interpretation of protein interaction networks

Luke Hakes, David L Robertson, Stephen G Oliver

An analysis of the use of genomic DNA as a universal reference in two channel DNA microarrays

Mugdha Gadgil, Wei Lian, Chetan Gadgil, Vivek Kapur, Wei-Shou Hu

Decoding the nucleoid organisation of Bacillus subtilis and Escherichia coli through gene expression data

Anne-Sophie Carpentier, Bruno Torrésani, Alex Grossmann, Alain Hénaut

Duplication and positive selection among hominin-specific PRAME genes

Zo？ Birtle, Leo Goodstadt, Chris Ponting

GC-compositional strand bias around transcription start sites in plants and fungi

Shigeo Fujimori, Takanori Washio, Masaru Tomita

Computational evidence for hundreds of non-conserved plant microRNAs

Morten Lindow, Anders Krogh

Analysis of vertebrate genomes suggests a new model for clade B serpin evolution

Dion Kaiserman, Phillip I Bird

Expression and genomic organization of zonadhesin-like genes in three species of fish give insight into the evolutionary history of a mosaic protein

Peter ND Hunt, Michael D Wilson, Kristian R von Schalburg, William S Davidson, Ben F Koop

Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley

Mauricio La Rota, Ramesh V Kantety, Ju-Kyung Yu, Mark E Sorrells

Comparative promoter region analysis powered by CORG

Christoph Dieterich, Steffen Grossmann, Andrea Tanzer, Stefan R？pcke, Peter F Arndt, Peter F Stadler, Martin Vingron

Genome wide analysis of Arabidopsis core promoters

Carlos Molina, Erich Grotewold

Prediction of the general transcription factors associated with RNA polymerase II in Plasmodium falciparum: conserved features and differences relative to other eukaryotes

Isabelle Callebaut, Karine Prat, Edwige Meurice, Jean-Paul Mornon, Stanislas Tomavo

A systematic search for new mammalian noncoding RNAs indicates little conserved intergenic transcription

Tomas Babak, Benjamin J Blencowe, Timothy R Hughes

Hyperspectral microarray scanning: impact on the accuracy and reliability of gene expression data

Jerilyn A Timlin, David M Haaland, Michael B Sinclair, Anthony D Aragon, M Juanita Martinez, Margaret Werner-Washburne

Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

Shea N Gardner, Mark C Wagner

PCR cloning of a histone H1 gene from Anopheles stephensi mosquito cells: comparison of the protein sequence with histone H1-like, C-terminal extensions on mosquito ribosomal protein S6

Yongjiao Zhai, Ann M Fallon

Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori

Nigel J Saunders, Prawit Boonmee, John F Peden, Stephen A Jarvis

Development of a cDNA array for chicken gene expression analysis

Joan Burnside, Paul Neiman, Jianshan Tang, Ryan Basom, Richard Talbot, Mark Aronszajn, David Burt, Jeff Delrow

Specialized microbial databases for inductive exploration of microbial genome sequences

Gang Fang, Christine Ho, Yaowu Qiu, Virginie Cubas, Zhou Yu, Cédric Cabau, Frankie Cheung, Ivan Moszer, Antoine Danchin

Comparative genomic analysis reveals a novel mitochondrial isoform of human rTS protein and unusual phylogenetic distribution of the rTS gene

Ping Liang, Jayakumar R Nair, Lei Song, John J McGuire, Bruce J Dolnick

Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts

Willem Rensink, Yuandan Lee, Jia Liu, Stacy Iobst, Shu Ouyang, C Robin Buell

Three microarray platforms: an analysis of their concordance in profiling gene expression

David Petersen, GVR Chandramouli, Joel Geoghegan, Joanne Hilburn, Jonathon Paarlberg, Chang Kim, David Munroe, Lisa Gangi, Jing Han, Raj Puri, Lou Staudt, John Weinstein, J Carl Barrett, Jeffrey Green, Ernest S Kawasaki

In vitro identification and in silico utilization of interspecies sequence similarities using GeneChip？ technology

Dmitry N Grigoryev, Shwu-Fan Ma, Brett A Simon, Rafael A Irizarry, Shui Q Ye, Joe GN Garcia

Using purine skews to predict genes in AT-rich poxviruses

Melissa Da Silva, Chris Upton

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