BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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The EH1 motif in metazoan transcription factors

Richard R Copley

Mitochondrial-encoded membrane protein transcripts are pyrimidine-rich while soluble protein transcripts and ribosomal RNA are purine-rich

Patrick C Bradshaw, Anand Rathi, David C Samuels

Diversity in domain architectures of Ser/Thr kinases and their homologues in prokaryotes

A Krupa, N Srinivasan

EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes

Eric D Brenner, Manpreet S Katari, Dennis W Stevenson, Stephen A Rudd, Andrew W Douglas, Walter N Moss, Richard W Twigg, Suzan J Runko, Giulia M Stellari, WR McCombie, Gloria M Coruzzi

Specificity and overlap in gene segment-defined antibody repertoires

Ramy A Arnaout

An acquisition account of genomic islands based on genome signature comparisons

MWJ van Passel, A Bart, HH Thygesen, ACM Luyf, AHC van Kampen, A van der Ende

The zebrafish progranulin gene family and antisense transcripts

Beno？t Cadieux, Babykumari P Chitramuthu, David Baranowski, Hugh PJ Bennett

Transcribed Tc1-like transposons in salmonid fish

Aleksei Krasnov, Heikki Koskinen, Sergey Afanasyev, Hannu M？ls？

Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide

Wook Chang, David A Small, Freshteh Toghrol, William E Bentley

XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis

Alexander Sczyrba, Michael Beckstette, Ali H Brivanlou, Robert Giegerich, Curtis R Altmann

Assessing the precision of high-throughput computational and laboratory approaches for the genome-wide identification of protein subcellular localization in bacteria

Sébastien Rey, Jennifer L Gardy, Fiona SL Brinkman

Bcipep: A database of B-cell epitopes

Sudipto Saha, Manoj Bhasin, Gajendra PS Raghava

Expression analysis of secreted and cell surface genes of five transformed human cell lines and derivative xenograft tumors

Robert A Stull, Roya Tavassoli, Scot Kennedy, Steve Osborn, Rachel Harte, Yan Lu, Cheryl Napier, Arie Abo, Daniel J Chin

Genome-wide localization of mobile elements: experimental, statistical and biological considerations

Betsy M Martinez-Vaz, Yang Xie, Wei Pan, Arkady B Khodursky

Investigating hookworm genomes by comparative analysis of two Ancylostoma species

Makedonka Mitreva, James P McCarter, Prema Arasu, John Hawdon, John Martin, Mike Dante, Todd Wylie, Jian Xu, Jason E Stajich, Wadim Kapulkin, Sandra W Clifton, Robert H Waterston, Richard K Wilson

Insights into a dinoflagellate genome through expressed sequence tag analysis

Jeremiah D Hackett, Todd E Scheetz, Hwan Yoon, Marcelo B Soares, Maria F Bonaldo, Thomas L Casavant, Debashish Bhattacharya

A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study

Eduardo N Taboada, Rey R Acedillo, Christian C Luebbert, Wendy A Findlay, John HE Nash

A gene expression fingerprint of C. elegans embryonic motor neurons

Rebecca M Fox, Stephen E Von Stetina, Susan J Barlow, Christian Shaffer, Kellen L Olszewski, Jason H Moore, Denis Dupuy, Marc Vidal, David M Miller

Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures

Barbara Dunn, R Paul Levine, Gavin Sherlock

Sequence changes in predicted promoter elements of STK11/LKB1 are unlikely to contribute to Peutz-Jeghers syndrome

Nicholas CM Hearle, Ian Tomlinson, Wendy Lim, Victoria Murday, Edwin Swarbrick, Guan Lim, Robin Phillips, Peter Lee, John O'Donohue, Richard C Trembath, Patrick J Morrison, Andrew Norman, Rohan Taylor, Shirley Hodgson, Anneke Lucassen, Richard S Houlston

A novel firmicute protein family related to the actinobacterial resuscitation-promoting factors by non-orthologous domain displacement

Adriana Ravagnani, Christopher L Finan, Michael Young

The odorant receptor repertoire of teleost fish

Tyler S Alioto, John Ngai

Bacterial genome adaptation to niches: Divergence of the potential virulence genes in three Burkholderia species of different survival strategies

H Stanley Kim, Mark A Schell, Yan Yu, Ricky L Ulrich, Saul H Sarria, William C Nierman, David DeShazer

Functional genomics and expression analysis of the Corynebacterium glutamicum fpr2-cysIXHDNYZ gene cluster involved in assimilatory sulphate reduction

Christian Rückert, Daniel J Koch, Daniel A Rey, Andreas Albersmeier, Sascha Mormann, Alfred Pühler, J？rn Kalinowski

Laterally transferred elements and high pressure adaptation in Photobacterium profundum strains

Stefano Campanaro, Alessandro Vezzi, Nicola Vitulo, Federico M Lauro, Michela D'Angelo, Francesca Simonato, Alessandro Cestaro, Giorgio Malacrida, Giulio Bertoloni, Giorgio Valle, Douglas H Bartlett

Comparative analysis of a BAC contig of porcine chromosome 13q31-q32 and human chromosome 3q21-q22

Mario Van Poucke, David Bourry, Fran？ois Piumi, Marc Mattheeuws, Alex Van Zeveren, Patrick Chardon, Luc J Peelman

Macrodissection versus microdissection of rectal carcinoma: minor influence of stroma cells to tumor cell gene expression profiles

Elza C de Bruin, Simone van de Pas, Esther H Lips, Ronald van Eijk, Minke MC van der Zee, Marcel Lombaerts, Tom van Wezel, Corrie AM Marijnen, J Han JM van Krieken, Jan Medema, Cornelis JH van de Velde, Paul HC Eilers, Lucy TC Peltenburg

Identification of functional SNPs in the 5-prime flanking sequences of human genes

Salim Mottagui-Tabar, Mohammad A Faghihi, Yosuke Mizuno, P？r G Engstr？m, Boris Lenhard, Wyeth W Wasserman, Claes Wahlestedt

The stress response against denatured proteins in the deletion of cytosolic chaperones SSA1/2 is different from heat-shock response in Saccharomyces cerevisiae

Rena Matsumoto, Kuniko Akama, Randeep Rakwal, Hitoshi Iwahashi

A class of models for analyzing GeneChip？ gene expression analysis array data

Wenhong Fan, Joel I Pritchard, James M Olson, Najma Khalid, Lue Zhao

A study of inter-lab and inter-platform agreement of DNA microarray data

Huixia Wang, Xuming He, Mark Band, Carole Wilson, Lei Liu

Application of four dyes in gene expression analyses by microarrays

Yvonne CM Staal, Marcel HM van Herwijnen, Frederik J van Schooten, Joost HM van Delft

Muscle regeneration in dystrophin-deficient mdx mice studied by gene expression profiling

R Turk, E Sterrenburg, EJ de Meijer, G-JB van Ommen, JT den Dunnen, PAC 't Hoen

GeneSeer: A sage for gene names and genomic resources

Andrew J Olson, Tim Tully, Ravi Sachidanandam

Control of gene expression during T cell activation: alternate regulation of mRNA transcription and mRNA stability

Chris Cheadle, Jinshui Fan, Yoon S Cho-Chung, Thomas Werner, Jill Ray, Lana Do, Myriam Gorospe, Kevin G Becker

In silico characterization of the family of PARP-like poly(ADP-ribosyl)transferases (pARTs)

Helge Otto, Pedro A Reche, Fernando Bazan, Katharina Dittmar, Friedrich Haag, Friedrich Koch-Nolte

The distribution of SNPs in human gene regulatory regions

Yongjian Guo, D Curtis Jamison

Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates

Bart MG Smits, Victor Guryev, Dimphy Zeegers, Dirk Wedekind, Hans J Hedrich, Edwin Cuppen

An EST-based approach for identifying genes expressed in the intestine and gills of pre-smolt Atlantic salmon (Salmo salar)

Heidi Hagen-Larsen, Jon K Laerdahl, Frank Panitz, Alexei Adzhubei, Bj？rn H？yheim

Large-scale genetic variation of the symbiosis-required megaplasmid pSymA revealed by comparative genomic analysis of Sinorhizobium meliloti natural strains

Elisa Giuntini, Alessio Mengoni, Carlotta De Filippo, Duccio Cavalieri, Nadia Aubin-Horth, Christian R Landry, Anke Becker, Marco Bazzicalupo

Preferential attachment in the evolution of metabolic networks

Sara Light, Per Kraulis, Arne Elofsson

Silhouette scores for assessment of SNP genotype clusters

Lovisa Lovmar, Annika Ahlford, Mats Jonsson, Ann-Christine Syv？nen

Chicken genome analysis reveals novel genes encoding biotin-binding proteins related to avidin family

Einari A Niskanen, Vesa P Hyt？nen, Alessandro Grapputo, Henri R Nordlund, Markku S Kulomaa, Olli H Laitinen

Gene expression signature of estrogen receptor α status in breast cancer

Martín C Abba, Yuhui Hu, Hongxia Sun, Jeffrey A Drake, Sally Gaddis, Keith Baggerly, Aysegul Sahin, C Marcelo Aldaz

Marine Genomics: A clearing-house for genomic and transcriptomic data of marine organisms

David J McKillen, Yian A Chen, Chuming Chen, Matthew J Jenny, Harold F Trent, Javier Robalino, David C McLean, Paul S Gross, Robert W Chapman, Gregory W Warr, Jonas S Almeida

High-throughput sequencing: a failure mode analysis

George S Yang, Jeffery M Stott, Duane Smailus, Sarah A Barber, Miruna Balasundaram, Marco A Marra, Robert A Holt

Gene expression patterns associated with blood-feeding in the malaria mosquito Anopheles gambiae

Ali N Dana, Young S Hong, Marcia K Kern, Maureen E Hillenmeyer, Brent W Harker, Neil F Lobo, James R Hogan, Patricia Romans, Frank H Collins

Predictive screening for regulators of conserved functional gene modules (gene batteries) in mammals

Sven Nelander, Erik Larsson, Erik Kristiansson, Robert M？nsson, Olle Nerman, Mikael Sigvardsson, Petter Mostad, Per Lindahl

Comparison of array-based comparative genomic hybridization with gene expression-based regional expression biases to identify genetic abnormalities in hepatocellular carcinoma

Kyle A Furge, Karl J Dykema, Coral Ho, Xin Chen

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