BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species

Boris A Legault, Arantxa Lopez-Lopez, Jose Alba-Casado, W Ford Doolittle, Henk Bolhuis, Francisco Rodriguez-Valera, R Thane Papke

A general pipeline for the development of anchor markers for comparative genomics in plants

Jakob Fredslund, Lene H Madsen, Birgit K Hougaard, Anna Nielsen, David Bertioli, Niels Sandal, Jens Stougaard, Leif Schauser

The DNA-damage signature in Saccharomyces cerevisiae is associated with single-strand breaks in DNA

Rebecca C Fry, Michael S DeMott, Joseph P Cosgrove, Thomas J Begley, Leona D Samson, Peter C Dedon

Operon information improves gene expression estimation for cDNA microarrays

Guanghua Xiao, Betsy Martinez-Vaz, Wei Pan, Arkady B Khodursky

Global transcriptional profiling of the toxic dinoflagellate Alexandrium fundyense using Massively Parallel Signature Sequencing

Deana L Erdner, Donald M Anderson

Comparative genomics of the syndecans defines an ancestral genomic context associated with matrilins in vertebrates

Ritu Chakravarti, Josephine C Adams

Fast rate of evolution in alternatively spliced coding regions of mammalian genes

Ekaterina O Ermakova, Ramil N Nurtdinov, Mikhail S Gelfand

Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes

Sook Jung, Dorrie Main, Margaret Staton, Ilhyung Cho, Tatyana Zhebentyayeva, Pere Arús, Albert Abbott

Analysis of 10,000 ESTs from lymphocytes of the cynomolgus monkey to improve our understanding of its immune system

Wei-Hua Chen, Xue-Xia Wang, Wei Lin, Xiao-Wei He, Zhen-Qiang Wu, Ying Lin, Song-Nian Hu, Xiao-Ning Wang

A high-throughput screen identifying sequence and promiscuity characteristics of the loxP spacer region in Cre-mediated recombination

Perseus I Missirlis, Duane E Smailus, Robert A Holt

Gene identification and analysis of transcripts differentially regulated in fracture healing by EST sequencing in the domestic sheep

Jochen Hecht, Heiner Kuhl, Stefan A Haas, Sebastian Bauer, Albert J Poustka, Jasmin Lienau, Hanna Schell, Asita C Stiege, Volkhard Seitz, Richard Reinhardt, Georg N Duda, Stefan Mundlos, Peter N Robinson

Acquisition of genome information from single-celled unculturable organisms (radiolaria) by exploiting genome profiling (GP)

Mariko Kouduka, Atsushi Matsuoka, Koichi Nishigaki

Alu elements contain many binding sites for transcription factors and may play a role in regulation of developmental processes

Paz Polak, Eytan Domany

A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model

Patrícia Beldade, Stephen Rudd, Jonathan D Gruber, Anthony D Long

Transcriptional profiling of mesenchymal stromal cells from young and old rats in response to Dexamethasone

Uri Akavia, Irena Shur, Gideon Rechavi, Dafna Benayahu

Differential evolutionary conservation of motif modes in the yeast protein interaction network

Wei-Po Lee, Bing-Chiang Jeng, Tun-Wen Pai, Chin-Pei Tsai, Chang-Yung Yu, Wen-Shyong Tzou

Establishment of a pipeline to analyse non-synonymous SNPs in Bos taurus

Michael A Lee, Orla M Keane, Belinda C Glass, Tim R Manley, Neil G Cullen, Ken G Dodds, Alan F McCulloch, Chris A Morris, Mark Schreiber, Jonathan Warren, Amonida Zadissa, Theresa Wilson, John C McEwan

Analysis and functional annotation of expressed sequence tags from the fall armyworm Spodoptera frugiperda

Youping Deng, Yinghua Dong, Venkata Thodima, Rollie J Clem, A Lorena Passarelli

A genome scan for quantitative trait loci affecting growth-related traits in an F1 family of Asian seabass (Lates calcarifer)

Chun Wang, Loong Lo, Ze Zhu, Gen Yue

Comparative genomics of vertebrate Fox cluster loci

Karl R Wotton, Sebastian M Shimeld

Analyses of carnivore microsatellites and their intimate association with tRNA-derived SINEs

Francesc López-Giráldez, Olga Andrés, Xavier Domingo-Roura, Montserrat Bosch

Gene expressions and copy numbers associated with metastatic phenotypes of uterine cervical cancer

Heidi Lyng, Runar S Br？vig, Debbie H Svendsrud, Ruth Holm, Olav Kaalhus, Kjetil Knutstad, Halldis Oksefjell, Kolbein Sundf？r, Gunnar B Kristensen, Trond Stokke

454 sequencing put to the test using the complex genome of barley

Thomas Wicker, Edith Schlagenhauf, Andreas Graner, Timothy J Close, Beat Keller, Nils Stein

Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli

Tim F Cooper, Andrew P Morby, Annabel Gunn, Dominique Schneider

In silico and microarray-based genomic approaches to identifying potential vaccine candidates against Leptospira interrogans

Hong-Liang Yang, Yong-Zhang Zhu, Jin-Hong Qin, Ping He, Xu-Cheng Jiang, Guo-Ping Zhao, Xiao-Kui Guo

Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

Weihong Xu, Jennifer G Aparicio, Oscar M Aparicio, Simon Tavaré

AgBase: a functional genomics resource for agriculture

Fiona M McCarthy, Nan Wang, G Bryce Magee, Bindu Nanduri, Mark L Lawrence, Evelyn B Camon, Daniel G Barrell, David P Hill, Mary E Dolan, W Paul Williams, Dawn S Luthe, Susan M Bridges, Shane C Burgess

Global gene expression during stringent response in Corynebacterium glutamicum in presence and absence of the rel gene encoding (p)ppGpp synthase

Olaf Brockmann-Gretza, J？rn Kalinowski

Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413

Juan Vizcaíno, Francisco González, M Belén Suárez, José Redondo, Julian Heinrich, Jesús Delgado-Jarana, Rosa Hermosa, Santiago Gutiérrez, Enrique Monte, Antonio Llobell, Manuel Rey

Genomic organization and evolution of the ULBP genes in cattle

Joshua H Larson, Brandy M Marron, Jonathan E Beever, Bruce A Roe, Harris A Lewin

Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa

Harshavardhan Doddapaneni, Jiqiang Yao, Hong Lin, M Andrew Walker, Edwin L Civerolo

High degree of conservancy among secreted salivary gland proteins from two geographically distant Phlebotomus duboscqi sandflies populations (Mali and Kenya)

Hirotomo Kato, Jennifer M Anderson, Shaden Kamhawi, Fabiano Oliveira, Phillip G Lawyer, Van Pham, Constance Sangare, Sibiry Samake, Ibrahim Sissoko, Mark Garfield, Lucie Sigutova, Petr Volf, Seydou Doumbia, Jesus G Valenzuela

MAP-ping genomic organization and organ-specific expression profiles of poplar MAP kinases and MAP kinase kinases

Marie-Claude Nicole, Louis-Philippe Hamel, Marie-Josée Morency, Nathalie Beaudoin, Brian E Ellis, Armand Séguin

Development and validation of a bovine macrophage specific cDNA microarray

Kirsty Jensen, Richard Talbot, Edith Paxton, David Waddington, Elizabeth J Glass

Artificial ants deposit pheromone to search for regulatory DNA elements

Yunlong Liu, Hiroki Yokota

Complete plastid genome sequence of Daucus carota: Implications for biotechnology and phylogeny of angiosperms

Tracey Ruhlman, Seung-Bum Lee, Robert K Jansen, Jessica B Hostetler, Luke J Tallon, Christopher D Town, Henry Daniell

The complete mitochondrial genome of the sea spider Nymphon gracile (Arthropoda: Pycnogonida)

Lars Podsiadlowski, Anke Braband

Identification and comparative analysis of sixteen fungal peptidyl-prolyl cis/trans isomerase repertoires

Trevor J Pemberton

The complete mitochondrial genome of the common sea slater, Ligia oceanica (Crustacea, Isopoda) bears a novel gene order and unusual control region features

Fabian Kilpert, Lars Podsiadlowski

MicroArray Facility: a laboratory information management system with extended support for Nylon based technologies

Paul Honoré, Samuel Granjeaud, Rebecca Tagett, Stéphane Deraco, Emmanuel Beaudoing, Jacques Rougemont, Stéphane Debono, Pascal Hingamp

Coding limits on the number of transcription factors

Shalev Itzkovitz, Tsvi Tlusty, Uri Alon

How well do HapMap SNPs capture the untyped SNPs?

Erwin Tantoso, Yuchen Yang, Kuo-Bin Li

Identification and analysis of gene families from the duplicated genome of soybean using EST sequences

Rex T Nelson, Randy Shoemaker

Annotation of novel neuropeptide precursors in the migratory locust based on transcript screening of a public EST database and mass spectrometry

Elke Clynen, Jurgen Huybrechts, Peter Verleyen, Arnold De Loof, Liliane Schoofs

Comparative analysis and integrative classification of NCI60 cell lines and primary tumors using gene expression profiling data

Huixia Wang, Shuguang Huang, Jianyong Shou, Eric W Su, Jude E Onyia, Birong Liao, Shuyu Li

Cross genome comparisons of serine proteases in Arabidopsis and rice

Lokesh P Tripathi, R Sowdhamini

Organization and post-transcriptional processing of focal adhesion kinase gene

Jean-Marc Corsi, Evelyne Rouer, Jean-Antoine Girault, Hervé Enslen

An inventory of mucin genes in the chicken genome shows that the mucin domain of Muc13 is encoded by multiple exons and that ovomucin is part of a locus of related gel-forming mucins

Tiange Lang, Gunnar C Hansson, Tore Samuelsson

Genome sequence alterations detected upon passage of Burkholderia mallei ATCC 23344 in culture and in mammalian hosts

Claudia M Romero, David DeShazer, Tamara Feldblyum, Jacques Ravel, Donald Woods, H Stanley Kim, Yan Yu, Catherine M Ronning, William C Nierman

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