BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Housekeeping and tissue-specific genes in mouse tissues

Kouame E Kouadjo, Yuichiro Nishida, Jean F Cadrin-Girard, Mayumi Yoshioka, Jonny St-Amand

HYBRIDdb: a database of hybrid genes in the human genome

Dae-Soo Kim, Jae-Won Huh, Heui-Soo Kim

The small FNR regulon of Neisseria gonorrhoeae: comparison with the larger Escherichia coli FNR regulon and interaction with the NarQ-NarP regulon

Rebekah N Whitehead, Tim W Overton, Lori AS Snyder, Simon J McGowan, Harry Smith, Jeff A Cole, Nigel J Saunders

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains

John N Hutchinson, Alexander W Ensminger, Christine M Clemson, Christopher R Lynch, Jeanne B Lawrence, Andrew Chess

A first generation BAC-based physical map of the channel catfish genome

Sylvie Quiniou, Geoffrey C Waldbieser, Mary V Duke

Mapping of transcription start sites of human retina expressed genes

Valeria Roni, Ronald Carpio, Bernd Wissinger

A multi-class predictor based on a probabilistic model: application to gene expression profiling-based diagnosis of thyroid tumors

Naoto Yukinawa, Shigeyuki Oba, Kikuya Kato, Kazuya Taniguchi, Kyoko Iwao-Koizumi, Yasuhiro Tamaki, Shinzaburo Noguchi, Shin Ishii

A biological question and a balanced (orthogonal) design: the ingredients to efficiently analyze two-color microarrays with Confirmatory Factor Analysis

Anne PG Crijns, Frans Gerbens, A Edo D Plantinga, Gert Jan Meersma, Steven de Jong, Robert MW Hofstra, Elisabeth GE de Vries, Ate GJ van der Zee, Geertruida H de Bock, Gerard J te Meerman

Gene expression profiling of chicken primordial germ cell ESTs

Jae Han, Tae Park, Jin Kim, Mi A Kim, Dajeong Lim, Jeong Lim, Heebal Kim

The complete mitochondrial genome of a basal teleost, the Asian arowana (Scleropages formosus, Osteoglossidae)

Gen Yue, Woei Liew, Laszlo Orban

Comparative genome analysis: selection pressure on the Borrelia vls cassettes is essential for infectivity

Gernot Gl？ckner, Ulrike Schulte-Spechtel, Markus Schilhabel, Marius Felder, Jürgen Sühnel, Bettina Wilske, Matthias Platzer

Changes in skeletal muscle gene expression following clenbuterol administration

Diane M Spurlock, Tara G McDaneld, Lauren M McIntyre

Large fragment Bst DNA polymerase for whole genome amplification of DNA from formalin-fixed paraffin-embedded tissues

Sarit Aviel-Ronen, Chang Qi Zhu, Bradley P Coe, Ni Liu, Spencer K Watson, Wan L Lam, Ming Tsao

An analysis of intra array repeats: the good, the bad and the non informative

Yedid Elbez, Shlomit Farkash-Amar, Itamar Simon

The features of Drosophila core promoters revealed by statistical analysis

Naum I Gershenzon, Edward N Trifonov, Ilya P Ioshikhes

Identification of rat lung – prominent genes by a parallel DNA microarray hybridization

Zhongming Chen, Jiwang Chen, Tingting Weng, Nili Jin, Lin Liu

A dehydration-inducible gene in the truffle Tuber borchii identifies a novel group of dehydrins

Simona Abba', Stefano Ghignone, Paola Bonfante

Further understanding human disease genes by comparing with housekeeping genes and other genes

Zhidong Tu, Li Wang, Min Xu, Xianghong Zhou, Ting Chen, Fengzhu Sun

Comparative salivary gland transcriptomics of sandfly vectors of visceral leishmaniasis

Jennifer M Anderson, Fabiano Oliveira, Shaden Kamhawi, Ben J Mans, David Reynoso, Amy E Seitz, Phillip Lawyer, Mark Garfield, MyVan Pham, Jesus G Valenzuela

Integration of curated databases to identify genotype-phenotype associations

Chern-Sing Goh, Tara A Gianoulis, Yang Liu, Jianrong Li, Alberto Paccanaro, Yves A Lussier, Mark Gerstein

Towards the identification of essential genes using targeted genome sequencing and comparative analysis

Adam M Gustafson, Evan S Snitkin, Stephen CJ Parker, Charles DeLisi, Simon Kasif

Comparative EST analysis provides insights into the basal aquatic fungus Blastocladiella emersonii

Karina F Ribichich, Raphaela C Georg, Suely L Gomes

Stem-loop structures in prokaryotic genomes

Mauro Petrillo, Giustina Silvestro, Pier Di Nocera, Angelo Boccia, Giovanni Paolella

Transcriptional monitoring of steady state and effects of anaerobic phases in chemostat cultures of the filamentous fungus Trichoderma reesei

Jari J Rautio, Bart A Smit, Marilyn Wiebe, Merja Penttil？, Markku Saloheimo

Structural and functional properties of genes involved in human cancer

Simon J Furney, Desmond G Higgins, Christos A Ouzounis, Núria López-Bigas

Centering, scaling, and transformations: improving the biological information content of metabolomics data

Robert A van den Berg, Huub CJ Hoefsloot, Johan A Westerhuis, Age K Smilde, Mari？t J van der Werf

Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome

Vasily Tcherepanov, Angelika Ehlers, Chris Upton

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

Matthew A Campbell, Brian J Haas, John P Hamilton, Stephen M Mount, C Robin Buell

Comparative genomics and evolution of the HSP90 family of genes across all kingdoms of organisms

Bin Chen, Daibin Zhong, Antónia Monteiro

The expansion of the metazoan microRNA repertoire

Jana Hertel, Manuela Lindemeyer, Kristin Missal, Claudia Fried, Andrea Tanzer, Christoph Flamm, Ivo L Hofacker, Peter F Stadler, The Students of Bioinformatics Computer Labs 2004 and 2005

Complete mitochondrial genome sequences for Crown-of-thorns starfish Acanthaster planci and Acanthaster brevispinus

Nina Yasuda, Masami Hamaguchi, Miho Sasaki, Satoshi Nagai, Masaki Saba, Kazuo Nadaoka

Comparison of PrASE and Pyrosequencing for SNP Genotyping

Max K？ller, Emilie Hultin, Kristina Holmberg, Marie-Louise Persson, Jacob Odeberg, Joakim Lundeberg, Afshin Ahmadian

Phylogenomic analysis of the GIY-YIG nuclease superfamily

Stanislaw Dunin-Horkawicz, Marcin Feder, Janusz M Bujnicki

Direct and heterologous approaches to identify the LET-756/FGF interactome

Cornel Popovici, Yael Berda, Fabien Conchonaud, Aurélie Harbis, Daniel Birnbaum, Régine Roubin

Comparative analysis of dinoflagellate chloroplast genomes reveals rRNA and tRNA genes

Adrian C Barbrook, Nicole Santucci, Lindsey J Plenderleith, Roger G Hiller, Christopher J Howe

Novel porcine repetitive elements

Ralph T Wiedmann, Dan J Nonneman, John W Keele

Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region

Scott J Westenberger, Gustavo C Cerqueira, Najib M El-Sayed, Bianca Zingales, David A Campbell, Nancy R Sturm

An online database for brain disease research

Brandon W Higgs, Michael Elashoff, Sam Richman, Beata Barci

Molecular characterization of a DNA fragment harboring the replicon of pBMB165 from Bacillus thuringiensis subsp. tenebrionis

Junyan Huang, Suxia Guo, Jacques Mahillon, Géraldine A Van der Auwera, Li Wang, Dongmei Han, Ziniu Yu, Ming Sun

Gene expression in TGFbeta-induced epithelial cell differentiation in a three-dimensional intestinal epithelial cell differentiation model

Kati M Juuti-Uusitalo, Katri Kaukinen, Markku M？ki, Jarno Tuimala, Heikki Kainulainen

Analysis of tag-position bias in MPSS technology

Junfeng Chen, Magnus Rattray

Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues

Abdel Aouacheria, Vincent Navratil, Audrey Barthelaix, Dominique Mouchiroud, Christian Gautier

In silico identification and comparative analysis of differentially expressed genes in human and mouse tissues

Sheng-Ying Pao, Win-Li Lin, Ming-Jing Hwang

SAGE detects microRNA precursors

Xijin Ge, Qingfa Wu, San Wang

Gene expression profiling of lymphoblastoid cell lines from monozygotic twins discordant in severity of autism reveals differential regulation of neurologically relevant genes

Valerie W Hu, Bryan C Frank, Shannon Heine, Norman H Lee, John Quackenbush

Distinct molecular mechanisms underlying clinically relevant subtypes of breast cancer: gene expression analyses across three different platforms

Therese S？rlie, Yulei Wang, Chunlin Xiao, Hilde Johnsen, Bj？rn Naume, Raymond R Samaha, Anne-Lise B？rresen-Dale

Cross-species hybridizations on a multi-species cDNA microarray to identify evolutionarily conserved genes expressed in oocytes

Maud Vallée, Claude Robert, Steve Méthot, Marie-France Palin, Marc-André Sirard

Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome

Cizhong Jiang, Zhongming Zhao

RINGdb: An integrated database for G protein-coupled receptors and regulators of G protein signaling

Yu-Ching Fang, Wei-Hsin Sun, Li-Cheng Wu, Hsien-Da Huang, Hsueh-Fen Juan, Jorng-Tzong Horng

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