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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis

Yong-Mei Bi, Rong-Lin Wang, Tong Zhu, Steven J Rothstein

Mapping of oxidative stress responses of human tumor cells following photodynamic therapy using hexaminolevulinate

Lina Cekaite, Qian Peng, Andrew Reiner, Susan Shahzidi, Siri Tveito, Ingegerd E Furre, Eivind Hovig

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations

Pongsakorn Wangkumhang, Kridsadakorn Chaichoompu, Chumpol Ngamphiw, Uttapong Ruangrit, Juntima Chanprasert, Anunchai Assawamakin, Sissades Tongsima

Gene expression of transporters and phase I/II metabolic enzymes in murine small intestine during fasting

Heleen M van den Bosch, Meike Bünger, Philip J de Groot, Jolanda van der Meijde, Guido JEJ Hooiveld, Michael Müller

Altered expression of mitochondrial and extracellular matrix genes in the heart of human fetuses with chromosome 21 trisomy

Anna Conti, Floriana Fabbrini, Paola D'Agostino, Rosa Negri, Dario Greco, Rita Genesio, Maria D'Armiento, Carlo Olla, Dario Paladini, Mariastella Zannini, Lucio Nitsch

Genomic expression during human myelopoiesis

Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Dario Basso, Silvio Bicciato, Roberta Zini, Claudia Gemelli, Gian Antonio Danieli, Sergio Ferrari

SNPs in Multi-Species Conserved Sequences (MCS) as useful markers in association studies: a practical approach

Jacob L McCauley, Shannon J Kenealy, Elliott H Margulies, Nathalie Schnetz-Boutaud, Simon G Gregory, Stephen L Hauser, Jorge R Oksenberg, Margaret A Pericak-Vance, Jonathan L Haines, Douglas P Mortlock

EGFR associated expression profiles vary with breast tumor subtype

Katherine A Hoadley, Victor J Weigman, Cheng Fan, Lynda R Sawyer, Xiaping He, Melissa A Troester, Carolyn I Sartor, Thais Rieger-House, Philip S Bernard, Lisa A Carey, Charles M Perou

New pleiotropic effects of eliminating a rare tRNA from Streptomyces coelicolor, revealed by combined proteomic and transcriptomic analysis of liquid cultures

Andy Hesketh, Giselda Bucca, Emma Laing, Fiona Flett, Graham Hotchkiss, Colin P Smith, Keith F Chater

cDNA sequences reveal considerable gene prediction inaccuracy in the Plasmodium falciparum genome

Fangli Lu, Hongying Jiang, Jinhui Ding, Jianbing Mu, Jesus G Valenzuela, José MC Ribeiro, Xin-zhuan Su

Integrative characterization of germ cell-specific genes from mouse spermatocyte UniGene library

Eunyoung Choi, Jiae Lee, Jungsu Oh, Inju Park, Cecil Han, Chongil Yi, Do Kim, Byung-Nam Cho, Edward M Eddy, Chunghee Cho

V1R promoters are well conserved and exhibit common putative regulatory motifs

Robert Stewart, Robert P Lane

A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly

Elisa Marques, Simon de Givry, Paul Stothard, Brenda Murdoch, Zhiquan Wang, James Womack, Stephen S Moore

Directional responses following recombinant cytokine stimulation of rainbow trout (Oncorhynchus mykiss) RTS-11 macrophage cells as revealed by transcriptome profiling

Samuel AM Martin, Jun Zou, Dominic F Houlihan, Christopher J Secombes

Genomic analysis of the secretion stress response in the enzyme-producing cell factory Aspergillus niger

Thomas Guillemette, No？l NME van Peij, Theo Goosen, Karin Lanthaler, Geoffrey D Robson, Cees AMJJ van den Hondel, Hein Stam, David B Archer

Comparative temporal and dose-dependent morphological and transcriptional uterine effects elicited by tamoxifen and ethynylestradiol in immature, ovariectomized mice

Cora J Fong, Lyle D Burgoon, Kurt J Williams, Agnes L Forgacs, Timothy R Zacharewski

The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae

Jean-Charles de Cambiaire, Christian Otis, Monique Turmel, Claude Lemieux

In silico comparative genomic analysis of GABAA receptor transcriptional regulation

Christopher J Joyce

STATc is a key regulator of the transcriptional response to hyperosmotic shock

Jianbo Na, Budi Tunggal, Ludwig Eichinger

Applicability of DNA pools on 500 K SNP microarrays for cost-effective initial screens in genomewide association studies

Sophia J Docherty, Lee M Butcher, Leonard C Schalkwyk, Robert Plomin

Genome wide transcriptional analysis of resting and IL2 activated human natural killer cells: gene expression signatures indicative of novel molecular signaling pathways

Karen Dybkaer, Javeed Iqbal, Guimei Zhou, Huimin Geng, Li Xiao, Alexander Schmitz, Francesco d'Amore, Wing C Chan

Comparative sequence analysis of leucine-rich repeats (LRRs) within vertebrate toll-like receptors

Norio Matsushima, Takanori Tanaka, Purevjav Enkhbayar, Tomoko Mikami, Masae Taga, Keiko Yamada, Yoshio Kuroki

Anopheles gambiae heat shock protein cognate 70B impedes o'nyong-nyong virus replication

Cheolho Sim, Young S Hong, Konstantin A Tsetsarkin, Dana L Vanlandingham, Stephen Higgs, Frank H Collins

Evolutionary implications of inversions that have caused intra-strand parity in DNA

Kohji Okamura, John Wei, Stephen W Scherer

The Entamoeba histolytica genome: primary structure and expression of proteolytic enzymes

Manuela Tillack, Laura Biller, Henriette Irmer, Michelle Freitas, Maria A Gomes, Egbert Tannich, Iris Bruchhaus

Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis

Jason W Abernathy, Peng Xu, Ping Li, De-Hai Xu, Huseyin Kucuktas, Phillip Klesius, Covadonga Arias, Zhanjiang Liu

A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE

Elida PB Ojopi, Paulo SL Oliveira, Diana N Nunes, Apu？ Paquola, Ricardo DeMarco, Sheila P Gregório, Karina A Aires, Carlos FM Menck, Luciana CC Leite, Sergio Verjovski-Almeida, Emmanuel Dias-Neto

New data on robustness of gene expression signatures in leukemia: comparison of three distinct total RNA preparation procedures

Marta Campo Dell'Orto, Andrea Zangrando, Luca Trentin, Rui Li, Wei-min Liu, Geertruy te Kronnie, Giuseppe Basso, Alexander Kohlmann

Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets

Sebastian Oeder, Joerg Mages, Paul Flicek, Roland Lang

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

Clémentine Vitte, Olivier Panaud, Hadi Quesneville

Inference of transcription modification in long-live yeast strains from their expression profiles

Chao Cheng, Paola Fabrizio, Huanying Ge, Valter D Longo, Lei M Li

Comprehensive analysis of co-occurring domain sets in yeast proteins

Inbar Cohen-Gihon, Ruth Nussinov, Roded Sharan

Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus

Linda A Raubeson, Rhiannon Peery, Timothy W Chumley, Chris Dziubek, H Matthew Fourcade, Jeffrey L Boore, Robert K Jansen

An early response regulatory cluster induced by low temperature and hydrogen peroxide in seedlings of chilling-tolerant japonica rice

Chen Cheng, Kil-Young Yun, Habtom W Ressom, Bijayalaxmi Mohanty, Vladimir B Bajic, Yulin Jia, Song Yun, Benildo G de los Reyes

Effects of DNA-targeted ionizing radiation produced by 5-[125I]iodo-2'-deoxyuridine on global gene expression in primary human cells

Mykyta V Sokolov, Ronald D Neumann, Igor G Panyutin

Identification and characterisation of the angiotensin converting enzyme-3 (ACE3) gene: a novel mammalian homologue of ACE

Monika Rella, Joann L Elliot, Timothy J Revett, Jerry Lanfear, Anne Phelan, Richard M Jackson, Anthony J Turner, Nigel M Hooper

A novel technique for measuring variations in DNA copy-number: competitive genomic polymerase chain reaction

Kyoko Iwao-Koizumi, Kazunori Maekawa, Yohko Nakamura, Sakae Saito, Shoko Kawamoto, Akira Nakagawara, Kikuya Kato

Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits

Carl-Johan Rubin, Johan Lindberg, Carolyn Fitzsimmons, Peter Savolainen, Per Jensen, Joakim Lundeberg, Leif Andersson, Andreas Kindmark

Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers

Jonas Quilang, Shaolin Wang, Ping Li, Jason Abernathy, Eric Peatman, Yongping Wang, Lingling Wang, Yaohua Shi, Richard Wallace, Ximing Guo, Zhanjiang Liu

Highly asymmetric rice genomes

Jing Ding, Hitoshi Araki, Qiang Wang, Pengfei Zhang, Sihai Yang, Jian-Qun Chen, Dacheng Tian

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

Fang Liu, Tor-Kristian Jenssen, Jeff Trimarchi, Claudio Punzo, Connie L Cepko, Lucila Ohno-Machado, Eivind Hovig, Winston Patrick Kuo

Global gene expression profiling in human lung cells exposed to cobalt

Veronique Malard, Frederic Berenguer, Odette Prat, Sylvie Ruat, Gerard Steinmetz, Eric Quemeneur

Simple models of genomic variation in human SNP density

Raazesh Sainudiin, Andrew G Clark, Richard T Durrett

Trichostatin A effects on gene expression in the protozoan parasite Entamoeba histolytica

Gretchen M Ehrenkaufer, Daniel J Eichinger, Upinder Singh

Transcriptome profiling of the small intestinal epithelium in germfree versus conventional piglets

Shankar R Chowdhury, Dale E King, Benjamin P Willing, Mark R Band, Jonathan E Beever, Adrienne B Lane, Juan J Loor, Juan C Marini, Laurie A Rund, Lawrence B Schook, Andrew G Van Kessel, H Rex Gaskins

Discovering multiple transcripts of human hepatocytes using massively parallel signature sequencing (MPSS)

Jian Huang, Pei Hao, Yun-Li Zhang, Fu-Xing Deng, Qing Deng, Yi Hong, Xiao-Wo Wang, Yun Wang, Ting-Ting Li, Xue-Gong Zhang, Yi-Xue Li, Peng-Yuan Yang, Hong-Yang Wang, Ze-Guang Han

Genetic diversity among major endemic strains of Leptospira interrogans in China

Ping He, Yue-Ying Sheng, Yao-Zhou Shi, Xiu-Gao Jiang, Jin-Hong Qin, Zhi-Ming Zhang, Guo-Ping Zhao, Xiao-Kui Guo

Diverse histone modifications on histone 3 lysine 9 and their relation to DNA methylation in specifying gene silencing

Jiejun Wu, Shu-Huei Wang, Dustin Potter, Joseph C Liu, Laura T Smith, Yue-Zhong Wu, Tim Huang, Christoph Plass

Rapid evolution of cancer/testis genes on the X chromosome

Brian J Stevenson, Christian Iseli, Sumir Panji, Monique Zahn-Zabal, Winston Hide, Lloyd J Old, Andrew J Simpson, C Victor Jongeneel

The relationships between the isoelectric point and: length of proteins, taxonomy and ecology of organisms

Joanna Kiraga, Pawel Mackiewicz, Dorota Mackiewicz, Maria Kowalczuk, Przemys？aw Biecek, Natalia Polak, Kamila Smolarczyk, Miroslaw R Dudek, Stanislaw Cebrat

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