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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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BMDExpress: a software tool for the benchmark dose analyses of genomic data

Longlong Yang, Bruce C Allen, Russell S Thomas

The TriTryp Phosphatome: analysis of the protein phosphatase catalytic domains

Rachel Brenchley, Humera Tariq, Helen McElhinney, Balázs Sz？？r, Julie Huxley-Jones, Robert Stevens, Keith Matthews, Lydia Tabernero

Differential gene expression profile in pig adipose tissue treated with/without clenbuterol

Jin Zhang, Qiang He, Qiu Y Liu, Wei Guo, Xue M Deng, Wei W Zhang, Xiao X Hu, Ning Li

Evolutionary consequences of a large duplication event in Trypanosoma brucei: Chromosomes 4 and 8 are partial duplicons

Andrew P Jackson

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

Ji？í Macas, Pavel Neumann, Alice Navrátilová

Experimental-confirmation and functional-annotation of predicted proteins in the chicken genome

Teresia J Buza, Fiona M McCarthy, Shane C Burgess

Bursts and horizontal evolution of DNA transposons in the speciation of pseudotetraploid salmonids

Johan G de Boer, Ryosuke Yazawa, William S Davidson, Ben F Koop

Lactation transcriptomics in the Australian marsupial, Macropus eugenii: transcript sequencing and quantification

Christophe M Lefèvre, Matthew R Digby, Jane C Whitley, Yvan Strahm, Kevin R Nicholas

Ganoderma lucidum polysaccharides in human monocytic leukemia cells: from gene expression to network construction

Kun-Chieh Cheng, Hsuan-Cheng Huang, Jenn-Han Chen, Jia-Wei Hsu, Hsu-Chieh Cheng, Chern-Han Ou, Wen-Bin Yang, Shui-Tein Chen, Chi-Huey Wong, Hsueh-Fen Juan

Experimental optimization of probe length to increase the sequence specificity of high-density oligonucleotide microarrays

Shingo Suzuki, Naoaki Ono, Chikara Furusawa, Akiko Kashiwagi, Tetsuya Yomo

Short sequence motifs, overrepresented in mammalian conserved non-coding sequences

Simon Minovitsky, Philip Stegmaier, Alexander Kel, Alexey S Kondrashov, Inna Dubchak

Proteomics reveals multiple routes to the osteogenic phenotype in mesenchymal stem cells

Kristin P Bennett, Charles Bergeron, Evrim Acar, Robert F Klees, Scott L Vandenberg, Bülent Yener, George E Plopper

Genes involved in TGFβ1-driven epithelial-mesenchymal transition of renal epithelial cells are topologically related in the human interactome map

Stefano Campanaro, Simone Picelli, Rossella Torregrossa, Laura Colluto, Monica Ceol, Dorella Del Prete, Angela D'Angelo, Giorgio Valle, Franca Anglani

Five distinct biological processes and 14 differentially expressed genes characterize TEL/AML1-positive leukemia

Virginie Gandemer, Anne-Ga？lle Rio, Marie de Tayrac, Vonnick Sibut, Stéphanie Mottier, Béatrice Ly Sunnaram, Catherine Henry, Annabelle Monnier, Christian Berthou, Edouard Le Gall, André Le Treut, Claudine Schmitt, Jean-Yves Le Gall, Jean Mosser, Marie-Dominique Galibert

Global comparative analysis of ESTs from the southern cattle tick, Rhipicephalus (Boophilus) microplus

Minghua Wang, Felix D Guerrero, Geo Pertea, Vishvanath M Nene

The functional genome of CA1 and CA3 neurons under native conditions and in response to ischemia

Dieter Newrzella, Payam S Pahlavan, Carola Krüger, Christine Boehm, Oliver Sorgenfrei, Helmut Schr？ck, Gisela Eisenhardt, Nadine Bischoff, Gerhard Vogt, Oliver Wafzig, Moritz Rossner, Martin H Maurer, Holger Hiemisch, Alfred Bach, Wolfgang Kuschinsky, Armin Schneider

High resolution radiation hybrid maps of bovine chromosomes 19 and 29: comparison with the bovine genome sequence assembly

Aparna Prasad, Thomas Schiex, Stephanie McKay, Brenda Murdoch, Zhiquan Wang, James E Womack, Paul Stothard, Stephen S Moore

Characterization of the equine 2'-5' oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes

Jonathan J Rios, Andrey A Perelygin, Maureen T Long, Teri L Lear, Andrey A Zharkikh, Margo A Brinton, David L Adelson

Giant panda BAC library construction and assembly of a 650-kb contig spanning major histocompatibility complex class II region

Chang-Jun Zeng, Hui-Juan Pan, Shao-Bin Gong, Jian-Qiu Yu, Qiu-Hong Wan, Sheng-Guo Fang

The extracellular Leucine-Rich Repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns

Jackie Dolan, Karen Walshe, Samantha Alsbury, Karsten Hokamp, Sean O'Keeffe, Tatsuya Okafuji, Suzanne FC Miller, Guy Tear, Kevin J Mitchell

Alternative splicing of TGF-betas and their high-affinity receptors TβRI, TβRII and TβRIII (betaglycan) reveal new variants in human prostatic cells

Lutz Konrad, Jonas A Scheiber, Elke V？lck-Badouin, Marcel M Keilani, Leslie Laible, Heidrun Brandt, Ansgar Schmidt, Gerhard Aumüller, Rainer Hofmann

Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina

Mikko Arvas, Teemu Kivioja, Alex Mitchell, Markku Saloheimo, David Ussery, Merja Penttila, Stephen Oliver

ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation

Jennifer A McCann, Enrique M Muro, Claire Palmer, Gareth Palidwor, Christopher J Porter, Miguel A Andrade-Navarro, Michael A Rudnicki

The cys-loop ligand-gated ion channel gene superfamily of the red flour beetle, Tribolium castaneum

Andrew K Jones, David B Sattelle

Analysis of the immune-inducible transcriptome from microbial stress resistant, rat-tailed maggots of the drone fly Eristalis tenax

Boran Altincicek, Andreas Vilcinskas

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing

Jessica A Schlueter, Jer-Young Lin, Shannon D Schlueter, Iryna F Vasylenko-Sanders, Shweta Deshpande, Jing Yi, Majesta O'Bleness, Bruce A Roe, Rex T Nelson, Brian E Scheffler, Scott A Jackson, Randy C Shoemaker

Effect of starvation on global gene expression and proteolysis in rainbow trout (Oncorhynchus mykiss)

Mohamed Salem, Jeff Silverstein, Caird E Rexroad, Jianbo Yao

Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip

Sarah MC Flynn, Steven M Carr

Integrated analysis of independent gene expression microarray datasets improves the predictability of breast cancer outcome

Zhe Zhang, Dechang Chen, David A Fenstermacher

The complete mitochondrial genome of the sea spider Achelia bituberculata (Pycnogonida, Ammotheidae): arthropod ground pattern of gene arrangement

Shin-Ju Park, Yong-Seok Lee, Ui Hwang

Comparison of the contributions of the nuclear and cytoplasmic compartments to global gene expression in human cells

Roger A Barthelson, Georgina M Lambert, Cheryl Vanier, Ronald M Lynch, David W Galbraith

Abundance and functional diversity of riboswitches in microbial communities

Marat D Kazanov, Alexey G Vitreschak, Mikhail S Gelfand

Characterization of oligopeptide patterns in large protein sets

Anders Bresell, Bengt Persson

SAMMD: Staphylococcus aureus Microarray Meta-Database

Vijayaraj Nagarajan, Mohamed O Elasri

Comparative genomic analysis of Tropheryma whipplei strains reveals that diversity among clinical isolates is mainly related to the WiSP proteins

My-Van La, Nicolas Crapoulet, Pascal Barbry, Didier Raoult, Patricia Renesto

Androgen-induced masculinization in rainbow trout results in a marked dysregulation of early gonadal gene expression profiles

Daniel Baron, Jér？me Montfort, Rémi Houlgatte, Alexis Fostier, Yann Guiguen

Comparative genomic analysis of Campylobacter jejuni associated with Guillain-Barré and Miller Fisher syndromes: neuropathogenic and enteritis-associated isolates can share high levels of genomic similarity

Eduardo N Taboada, Alex van Belkum, Nobuhiro Yuki, Rey R Acedillo, Peggy CR Godschalk, Michiaki Koga, Hubert P Endtz, Michel Gilbert, John HE Nash

Gene expression profiling of long-lived dwarf mice: longevity-associated genes and relationships with diet, gender and aging

William R Swindell

Expression and water calcium dependence of calcium transporter isoforms in zebrafish gill mitochondrion-rich cells

Bo-Kai Liao, Ang-Ni Deng, Shyh-Chi Chen, Ming-Yi Chou, Pung-Pung Hwang

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton

Jean Muller, André Mehlen, Guillaume Vetter, Mikalai Yatskou, Arnaud Muller, Frédéric Chalmel, Olivier Poch, Evelyne Friederich, Laurent Vallar

Gene profile analysis of osteoblast genes differentially regulated by histone deacetylase inhibitors

Tania M Schroeder, Aswathy K Nair, Rodney Staggs, Anne-Francoise Lamblin, Jennifer J Westendorf

The mitochondrial DNA control region shows genetically correlated levels of heteroplasmy in leukocytes of centenarians and their offspring

Giuseppina Rose, Giuseppe Passarino, Vittorio Scornaienchi, Giuseppe Romeo, Serena Dato, Dina Bellizzi, Vincenzo Mari, Emidio Feraco, Raffaele Maletta, Amalia Bruni, Claudio Franceschi, Giovanna De Benedictis

Genomic organization of duplicated major histocompatibility complex class I regions in Atlantic salmon (Salmo salar)

Morten F Lukacs, H？vard Harstad, Unni Grimholt, Marianne Beetz-Sargent, Glenn A Cooper, Linda Reid, Hege G Bakke, Ruth B Phillips, Kristina M Miller, William S Davidson, Ben F Koop

Evolutionary genomics of plant genes encoding N-terminal-TM-C2 domain proteins and the similar FAM62 genes and synaptotagmin genes of metazoans

Molly Craxton

Complete sequence and organization of Antheraea pernyi nucleopolyhedrovirus, a dr-rich baculovirus

Zuo-Ming Nie, Zhi-Fang Zhang, Dan Wang, Ping-An He, Cai-Ying Jiang, Li Song, Fang Chen, Jie Xu, Ling Yang, Lin-Lin Yu, Jian Chen, Zheng-Bing Lv, Jing-Jing Lu, Xiang-Fu Wu, Yao-Zhou Zhang

De novo protein sequence analysis of Macaca mulatta

Nilesh S Tannu, Scott E Hemby

A yeast model for target-primed (non-LTR) retrotransposition

Timothy JD Goodwin, Jason N Busby, Russell TM Poulter

Development of a physical map of the soybean pathogen Fusarium virguliforme based on synteny with Fusarium graminearum genomic DNA

Jeffry L Shultz, Sikander Ali, Linda Ballard, David A Lightfoot

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

Judith L Gómez-Porras, Diego Ria？o-Pachón, Ingo Dreyer, Jorge E Mayer, Bernd Mueller-Roeber

Quantitative multiplex detection of plant pathogens using a novel ligation probe-based system coupled with universal, high-throughput real-time PCR on OpenArrays？

Ronald van Doorn, Marianna Szemes, Peter Bonants, George A Kowalchuk, Joana F Salles, Elen Ortenberg, Cor D Schoen

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