BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Temporal dynamics of gene expression in the lung in a baboon model of E. coli sepsis

Hua Zhu, Yuhong Tang, Lacramioara Ivanciu, Michael Centola, Cristina Lupu, Fletcher B Taylor, Florea Lupu

Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification

Paul A Lyons, Maria Koukoulaki, Alexander Hatton, Karen Doggett, Hayley B Woffendin, Afzal N Chaudhry, Kenneth GC Smith

A bootstrap based analysis pipeline for efficient classification of phylogenetically related animal miRNAs

Yong Huang, Xun Gu

Identification and analysis of Single Nucleotide Polymorphisms (SNPs) in the mosquito Anopheles funestus, malaria vector

Charles S Wondji, Janet Hemingway, Hilary Ranson

Growth of the protozoan parasite Entamoeba histolytica in 5-azacytidine has limited effects on parasite gene expression

Ibne Ali, Gretchen M Ehrenkaufer, Jason A Hackney, Upinder Singh

A sequence based synteny map between soybean and Arabidopsis thaliana

Jeffry L Shultz, Jeffery D Ray, David A Lightfoot

Simple sequence repeats in zebra finch (Taeniopygia guttata) expressed sequence tags: a new resource for evolutionary genetic studies of passerines

Jon Slate, Matthew C Hale, Timothy R Birkhead

Geography and genography: prediction of continental origin using randomly selected single nucleotide polymorphisms

Dominic J Allocco, Qing Song, Gary H Gibbons, Marco F Ramoni, Isaac S Kohane

Identification of plant promoter constituents by analysis of local distribution of short sequences

Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata, Tetsuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe

Putative null distributions corresponding to tests of differential expression in the Golden Spike dataset are intensity dependent

Daniel P Gaile, Jeffrey C Miecznikowski

cTFbase: a database for comparative genomics of transcription factors in cyanobacteria

Jinyu Wu, Fangqing Zhao, Shengqin Wang, Gang Deng, Junrong Wang, Jie Bai, Jianxin Lu, Jia Qu, Qiyu Bao

Novel insights into RNAi off-target effects using C. elegans paralogs

Jean-Fran？ois Rual, Niels Klitgord, Guillaume Achaz

Phylogenetic distribution of translational GTPases in bacteria

T？nu Margus, Maido Remm, Tanel Tenson

Identification of putative cis-regulatory elements in Cryptosporidium parvum by de novo pattern finding

Nandita Mullapudi, Cheryl A Lancto, Mitchell S Abrahamsen, Jessica C Kissinger

TICdb: a collection of gene-mapped translocation breakpoints in cancer

Francisco J Novo, I？igo de Mendíbil, José L Vizmanos

Identification of rat lung-specific microRNAs by microRNA microarray: valuable discoveries for the facilitation of lung research

Yang Wang, Tingting Weng, Deming Gou, Zhongming Chen, Narendranath Chintagari, Lin Liu

Mapping a Quantitative Trait Locus (QTL) conferring pyrethroid resistance in the African malaria vector Anopheles funestus

Charles S Wondji, John Morgan, Maureen Coetzee, Richard H Hunt, Keith Steen, William C Black, Janet Hemingway, Hilary Ranson

Comparison of Genomes of Three Xanthomonas oryzae Bacteriophages

Chia-Ni Lee, Rouh-Mei Hu, Teh-Yuan Chow, Juey-Wen Lin, Hui-Yi Chen, Yi-Hsiung Tseng, Shu-Fen Weng

Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule

Pierre-Yves Rescan, Jerome Montfort, Cécile Rallière, Aurélie Le Cam, Diane Esquerré, Karine Hugot

Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets

Claude Chelala, Stephan A Hahn, Hannah J Whiteman, Sayka Barry, Deepak Hariharan, Tomasz P Radon, Nicholas R Lemoine, Tatjana Crnogorac-Jurcevic

Genome-wide changes in expression profile of murine endogenous retroviruses (MuERVs) in distant organs after burn injury

Young-Kwan Lee, Alex Chew, Lauren Fitzsimon, Rita Thomas, David Greenhalgh, Kiho Cho

TFCONES: A database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements

Alison P Lee, Yuchen Yang, Sydney Brenner, Byrappa Venkatesh

Profiling sex-biased gene expression during parthenogenetic reproduction in Daphnia pulex

Brian D Eads, John K Colbourne, Elizabeth Bohuski, Justen Andrews

Serial Analysis of Gene Expression in Plasmodium berghei salivary gland sporozoites

Isabelle Rosinski-Chupin, Thomas Chertemps, Bertrand Boisson, Sylvie Perrot, Emmanuel Bischoff, Jér？me Briolay, Pierre Couble, Robert Ménard, Paul Brey, Patricia Baldacci

Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021

Vincent M Ulvé, Emeric W Sevin, Angélique Chéron, Frédérique Barloy-Hubler

Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques

Summer L Street, Randall C Kyes, Richard Grant, Betsy Ferguson

A large-scale proteomic analysis of human embryonic stem cells

Thomas C Schulz, Anna Swistowska, Ying Liu, Andrzej Swistowski, Gail Palmarini, Sandii N Brimble, Eric Sherrer, Allan J Robins, Mahendra S Rao, Xianmin Zeng

Maintenance of transposon-free regions throughout vertebrate evolution

Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick

Specific elements of the glyoxylate pathway play a significant role in the functional transition of the soybean cotyledon during seedling development

Delkin O Gonzalez, Lila O Vodkin

Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries

Melody S Clark, Michael AS Thorne, Jelena Pura？, Gordana Grubor-Laj？i？, Michael Kube, Richard Reinhardt, M Roger Worland

AphanoDB: a genomic resource for Aphanomyces pathogens

Mohammed-Amine Madoui, Elodie Gaulin, Catherine Mathé, Hélène San Clemente, Arnaud Couloux, Patrick Wincker, Bernard Dumas

A method for the construction of equalized directional cDNA libraries from hydrolyzed total RNA

Claytus Davis, Zeev Barvish, Inna Gitelman

Computational prediction and experimental validation of Ciona intestinalis microRNA genes

Trina M Norden-Krichmar, Janette Holtz, Amy E Pasquinelli, Terry Gaasterland

From transcriptome to biological function: environmental stress in an ectothermic vertebrate, the coral reef fish Pomacentrus moluccensis

Karin S Kassahn, Ross H Crozier, Alister C Ward, Glenn Stone, M Julian Caley

Fasting induces a biphasic adaptive metabolic response in murine small intestine

Milka Sokolovi？, Diederik Wehkamp, Aleksandar Sokolovi？, Jacqueline Vermeulen, Lisa A Gilhuijs-Pederson, Rachel IM van Haaften, Yuri Nikolsky, Chris TA Evelo, Antoine HC van Kampen, Theodorus BM Hakvoort, Wouter H Lamers

Genetic diversity of the obligate intracellular bacterium Chlamydophila pneumoniae by genome-wide analysis of single nucleotide polymorphisms: evidence for highly clonal population structure

Thomas Rattei, Stephan Ott, Michaela Gutacker, Jan Rupp, Matthias Maass, Stefan Schreiber, Werner Solbach, Thierry Wirth, Jens Gieffers

Wide diversity in structure and expression profiles among members of the Caenorhabditis elegans globin protein family

David Hoogewijs, Eva Geuens, Sylvia Dewilde, Andy Vierstraete, Luc Moens, Serge Vinogradov, Jacques R Vanfleteren

A systems-biology analysis of isogenic megakaryocytic and granulocytic cultures identifies new molecular components of megakaryocytic apoptosis

Chi Chen, Peter G Fuhrken, Li Huang, Pani Apostolidis, Min Wang, Carlos J Paredes, William M Miller, Eleftherios T Papoutsakis

The complete mitochondrial genome of Pseudocellus pearsei (Chelicerata: Ricinulei) and a comparison of mitochondrial gene rearrangements in Arachnida

Kathrin Fahrein, Giovanni Talarico, Anke Braband, Lars Podsiadlowski

Analysis and functional annotation of expressed sequence tags (ESTs) from multiple tissues of oil palm (Elaeis guineensis Jacq.)

Chai-Ling Ho, Yen-Yen Kwan, Mei-Chooi Choi, Sue-Sean Tee, Wai-Har Ng, Kok-Ang Lim, Yang-Ping Lee, Siew-Eng Ooi, Weng-Wah Lee, Jin-Ming Tee, Siang-Hee Tan, Harikrishna Kulaveerasingam, Sharifah Alwee, Meilina Abdullah

Diversity and structure of PIF/Harbinger-like elements in the genome of Medicago truncatula

Dariusz Grzebelus, Slawomir Lasota, Tomasz Gambin, Gregory Kucherov, Anna Gambin

Gene expression profiles in testis of pigs with extreme high and low levels of androstenone

Maren Moe, Theo Meuwissen, Sigbj？rn Lien, Christian Bendixen, Xuefei Wang, Lene Conley, Ingunn Berget, H？vard Tajet, Eli Grindflek

Poly-G/poly-C tracts in the genomes of Caenorhabditis

Yang Zhao, Nigel J O'Neil, Ann M Rose

Innate gene repression associated with Mycobacterium bovis infection in cattle: toward a gene signature of disease

Kieran G Meade, Eamonn Gormley, Mairéad B Doyle, Tara Fitzsimons, Cliona O'Farrelly, Eamon Costello, Joseph Keane, Yingdong Zhao, David E MacHugh

Vertebrate conserved non coding DNA regions have a high persistence length and a short persistence time

Dorota Retelska, Emmanuel Beaudoing, Cédric Notredame, C Victor Jongeneel, Philipp Bucher

Database of Trypanosoma cruzi repeated genes: 20 000 additional gene variants

Erik Arner, Ellen Kindlund, Daniel Nilsson, Fatima Farzana, Marcela Ferella, Martti T Tammi, Bj？rn Andersson

Computational selection and prioritization of candidate genes for Fetal Alcohol Syndrome

Zané Lombard, Nicki Tiffin, Oliver Hofmann, Vladimir B Bajic, Winston Hide, Michèle Ramsay

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