BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Microarray analysis of iron deficiency chlorosis in near-isogenic soybean lines

Jamie A O'Rourke, Dirk V Charlson, Delkin O Gonzalez, Lila O Vodkin, Michelle A Graham, Silvia R Cianzio, Michael A Grusak, Randy C Shoemaker

Comparative analysis of cyanobacterial superoxide dismutases to discriminate canonical forms

Balakrishnan Priya, Jagadeesan Premanandh, Raman T Dhanalakshmi, Thangaraj Seethalakshmi, Lakshmanan Uma, Dharmar Prabaharan, Gopalakrishnan Subramanian

Bioinformatic evaluation of L-arginine catabolic pathways in 24 cyanobacteria and transcriptional analysis of genes encoding enzymes of L-arginine catabolism in the cyanobacterium Synechocystis sp. PCC 6803

Sarah Schriek, Christian Rückert, Dorothee Staiger, Elfriede K Pistorius, Klaus-Peter Michel

Vascular microarray profiling in two models of hypertension identifies caveolin-1, Rgs2 and Rgs5 as antihypertensive targets

T Hilton Grayson, Stephen J Ohms, Therese D Brackenbury, Kate R Meaney, Kaiman Peng, Yvonne E Pittelkow, Susan R Wilson, Shaun L Sandow, Caryl E Hill

Computational RNomics of Drosophilids

Dominic Rose, J？rg Hackermüller, Stefan Washietl, Kristin Reiche, Jana Hertel, Sven Findei？, Peter F Stadler, Sonja J Prohaska

Sequence analysis of an Archaeal virus isolated from a hypersaline lake in Inner Mongolia, China

Eulyn Pagaling, Richard D Haigh, William D Grant, Don A Cowan, Brian E Jones, Yanhe Ma, Antonio Ventosa, Shaun Heaphy

Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions

Thiago M Venancio, Ricardo DeMarco, Giulliana T Almeida, Katia C Oliveira, Jo？o C Setubal, Sergio Verjovski-Almeida

Suicide candidate genes associated with bipolar disorder and schizophrenia: An exploratory gene expression profiling analysis of post-mortem prefrontal cortex

Sanghyeon Kim, Kwang-Ho Choi, Ali Baykiz, Howard K Gershenfeld

Analysis of the hybrid proline-rich protein families from seven plant species suggests rapid diversification of their sequences and expression patterns

Lenka Dvo？áková, Fatima Cvr？ková, Luká？ Fischer

Genome-wide analysis of growth phase-dependent translational and transcriptional regulation in halophilic archaea

Christian Lange, Alexander Zaigler, Mathias Hammelmann, Jens Twellmeyer, Günter Raddatz, Stephan C Schuster, Dieter Oesterhelt, J？rg Soppa

A comparison of microarray and MPSS technology platforms for expression analysis of Arabidopsis

Junfeng Chen, Vikas Agrawal, Magnus Rattray, Marilyn AL West, Dina A St Clair, Richard W Michelmore, Sean J Coughlan, Blake C Meyers

Association of the Matrix Attachment Region Recognition Signature with coding regions in Caenorhabditis elegans

Alasdair Anthony, Mark Blaxter

An optimized procedure greatly improves EST vector contamination removal

Yi-An Chen, Chang-Chun Lin, Chin-Di Wang, Huan-Bin Wu, Pei-Ing Hwang

Promoter analysis of intestinal genes induced during iron-deprivation reveals enrichment of conserved SP1-like binding sites

James F Collins, Zihua Hu

Identification of novel pathway partners of p68 and p72 RNA helicases through Oncomine meta-analysis

Brian J Wilson, Vincent Giguère

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology

Diego Lijavetzky, José Cabezas, Ana Ibá？ez, Virginia Rodríguez, José M Martínez-Zapater

Identification of single nucleotide polymorphisms in bovine CARD15 and their associations with health and production traits in Canadian Holsteins

Sameer D Pant, Flavio S Schenkel, Ivan Leyva-Baca, Bhawani S Sharma, Niel A Karrow

Genome-wide transcriptional analysis of grapevine berry ripening reveals a set of genes similarly modulated during three seasons and the occurrence of an oxidative burst at vèraison

Stefania Pilati, Michele Perazzolli, Andrea Malossini, Alessandro Cestaro, Lorenzo Demattè, Paolo Fontana, Antonio Dal Ri, Roberto Viola, Riccardo Velasco, Claudio Moser

e-Fungi: a data resource for comparative analysis of fungal genomes

Cornelia Hedeler, Han Wong, Michael J Cornell, Intikhab Alam, Darren M Soanes, Magnus Rattray, Simon J Hubbard, Nicholas J Talbot, Stephen G Oliver, Norman W Paton

Expression profiling on soybean leaves reveals integration of ER- and osmotic-stress pathways

André ST Irsigler, Maximiller DL Costa, Ping Zhang, Pedro AB Reis, Ralph E Dewey, Rebecca S Boston, Elizabeth PB Fontes

Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development

Laurent G Deluc, Jér？me Grimplet, Matthew D Wheatley, Richard L Tillett, David R Quilici, Craig Osborne, David A Schooley, Karen A Schlauch, John C Cushman, Grant R Cramer

Sequence features responsible for intron retention in human

Noboru Sakabe, Sandro de Souza

Compared genomics of the strand switch region of Leishmania chromosome 1 reveal a novel genus-specific gene and conserved structural features and sequence motifs

Jacques Puechberty, Christine Blaineau, Sabrina Meghamla, Lucien Crobu, Michel Pagès, Patrick Bastien

A phylogenomic analysis of the Actinomycetales mce operons

Nicola Casali, Lee W Riley

Microarray-based analysis of fish egg quality after natural or controlled ovulation

Emilie Bonnet, Alexis Fostier, Julien Bobe

The molecular signature of therapeutic mesenchymal stem cells exposes the architecture of the hematopoietic stem cell niche synapse

Enrico Pedemonte, Federica Benvenuto, Simona Casazza, Gianluigi Mancardi, Jorge R Oksenberg, Antonio Uccelli, Sergio E Baranzini

Intercenter reliability and validity of the rhesus macaque GeneChip

Fenghai Duan, Eliot R Spindel, Yu-Hua Li, Robert B Norgren

Frame disruptions in human mRNA transcripts, and their relationship with splicing and protein structures

Paul Harrison, Zhan Yu

Sequences conserved by selection across mouse and human malaria species

Hideo Imamura, Jason H Persampieri, Jeffrey H Chuang

Optimization of cDNA microarrays procedures using criteria that do not rely on external standards

Torunn Bruland, Endre Anderssen, Berit Doseth, Hallgeir Bergum, Vidar Beisvag, Astrid L？greid

Effects of iron loading on muscle: genome-wide mRNA expression profiling in the mouse

Alejandra Rodriguez, Mika Hilvo, Leena Kyt？m？ki, Robert E Fleming, Robert S Britton, Bruce R Bacon, Seppo Parkkila

MetaProm: a neural network based meta-predictor for alternative human promoter prediction

Junwen Wang, Lyle H Ungar, Hung Tseng, Sridhar Hannenhalli

Intrinsic androgen-dependent gene expression patterns revealed by comparison of genital fibroblasts from normal males and individuals with complete and partial androgen insensitivity syndrome

Paul-Martin Holterhus, Uta Deppe, Ralf Werner, Annette Richter-Unruh, Jan-Hendrik Bebermeier, Lutz Wünsch, Susanne Krege, Hans-Udo Schweikert, Janos Demeter, Felix Riepe, Olaf Hiort, James D Brooks

Diagnostic and prognostic gene expression signatures in 177 soft tissue sarcomas: hypoxia-induced transcription profile signifies metastatic potential

Princy Francis, Heidi Naml？s, Christoph Müller, Patrik Edén, Josefin Fernebro, Jeanne-Marie Berner, Bodil Bjerkehagen, M？ns ？kerman, P？r-Ola Bendahl, Anna Isinger, Anders Rydholm, Ola Myklebost, Mef Nilbert

The actin multigene family of Paramecium tetraurelia

Ivonne M Sehring, J？rg Mansfeld, Christoph Reiner, Erika Wagner, Helmut Plattner, Roland Kissmehl

Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists

Alexandre Gattiker, Riccarda Rischatsch, Philippe Demougin, Sylvia Voegeli, Fred S Dietrich, Peter Philippsen, Michael Primig

An annotated catalogue of salivary gland transcripts in the adult female mosquito, ？des ？gypti*

José MC Ribeiro, Bruno Arcà, Fabrizio Lombardo, Eric Calvo, Van My Phan, Prafulla K Chandra, Stephen K Wikel

Expansion of the Bactericidal/Permeability Increasing-like (BPI-like) protein locus in cattle

Thomas T Wheeler, Kylie A Hood, Nauman J Maqbool, John C McEwan, Colin D Bingle, Shaying Zhao

The alternative sigma factor SigB of Corynebacterium glutamicum modulates global gene expression during transition from exponential growth to stationary phase

Christof Larisch, Diana Nakunst, Andrea T Hüser, Andreas Tauch, J？rn Kalinowski

Functional annotation of 19,841 Populus nigra full-length enriched cDNA clones

Tokihiko Nanjo, Tetsuya Sakurai, Yasushi Totoki, Atsushi Toyoda, Mitsuru Nishiguchi, Tomoyuki Kado, Tomohiro Igasaki, Norihiro Futamura, Motoaki Seki, Yoshiyuki Sakaki, Kazuo Shinozaki, Kenji Shinohara

Continuous exposure to Plasmodium results in decreased susceptibility and transcriptomic divergence of the Anopheles gambiae immune system

Ruth Aguilar, Suchismita Das, Yuemei Dong, George Dimopoulos

Gene expression analysis reveals early changes in several molecular pathways in cerebral malaria-susceptible mice versus cerebral malaria-resistant mice

Nicolas F Delahaye, Nicolas Coltel, Denis Puthier, Mathieu Barbier, Philippe Benech, Florence Joly, Fuad A Iraqi, Georges E Grau, Catherine Nguyen, Pascal Rihet

Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses

Adam Monier, Jean-Michel Claverie, Hiroyuki Ogata

Unravelling the molecular control of calvarial suture fusion in children with craniosynostosis

Anna K Coussens, Christopher R Wilkinson, Ian P Hughes, C Phillip Morris, Angela van Daal, Peter J Anderson, Barry C Powell

Denoising inferred functional association networks obtained by gene fusion analysis

Atanas Kamburov, Leon Goldovsky, Shiri Freilich, Aliki Kapazoglou, Victor Kunin, Anton J Enright, Athanasios Tsaftaris, Christos A Ouzounis

Predicting protein function by machine learning on amino acid sequences – a critical evaluation

Ali Al-Shahib, Rainer Breitling, David R Gilbert

Comparative proteomic analysis of cell lines and scrapings of the human intestinal epithelium

Kaatje Lenaerts, Freek G Bouwman, Wouter H Lamers, Johan Renes, Edwin C Mariman

ATP-binding cassette systems in Burkholderia pseudomallei and Burkholderia mallei

David N Harland, Elie Dassa, Richard W Titball, Katherine A Brown, Helen S Atkins

A multi-treatment experimental system to examine photosynthetic differentiation in the maize leaf

Ruairidh JH Sawers, Peng Liu, Katya Anufrikova, JT Gene Hwang, Thomas P Brutnell

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