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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Fourmidable: a database for ant genomics

Yannick Wurm, Paolo Uva, Frédéric Ricci, John Wang, Stephanie Jemielity, Christian Iseli, Laurent Falquet, Laurent Keller

The iron/heme regulated genes of Haemophilus influenzae: comparative transcriptional profiling as a tool to define the species core modulon

Paul W Whitby, Thomas W Seale, Timothy M VanWagoner, Daniel J Morton, Terrence L Stull

Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast

Craig Lawless, Richard D Pearson, Julian N Selley, Julia B Smirnova, Christopher M Grant, Mark P Ashe, Graham D Pavitt, Simon J Hubbard

Genomic evidence for non-random endemic populations of decaying exons from mammalian genes

David Morais, Paul M Harrison

MHC-linked and un-linked class I genes in the wallaby

Hannah V Siddle, Janine E Deakin, Penny Coggill, Elizabeth Hart, Yuanyuan Cheng, Emily SW Wong, Jennifer Harrow, Stephan Beck, Katherine Belov

Reconstruction and functional analysis of altered molecular pathways in human atherosclerotic arteries

Stefano Cagnin, Michele Biscuola, Cristina Patuzzo, Elisabetta Trabetti, Alessandra Pasquali, Paolo Laveder, Giuseppe Faggian, Mauro Iafrancesco, Alessandro Mazzucco, Pier Franco Pignatti, Gerolamo Lanfranchi

High-resolution mapping of plasmid transcriptomes in different host bacteria

Masatoshi Miyakoshi, Hiromi Nishida, Masaki Shintani, Hisakazu Yamane, Hideaki Nojiri

Comparative proteome analysis of psychrophilic versus mesophilic bacterial species: Insights into the molecular basis of cold adaptation of proteins

Raghu Metpally, Boojala Reddy

Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend

David M McGaughey, Zachary E Stine, Jimmy L Huynh, Ryan M Vinton, Andrew S McCallion

Mitochondrial genome sequence and gene order of Sipunculus nudus give additional support for an inclusion of Sipuncula into Annelida

Adina Mwinyi, Achim Meyer, Christoph Bleidorn, Bernhard Lieb, Thomas Bartolomaeus, Lars Podsiadlowski

Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome

Chia-wei Wu, Timothy M Schramm, Shiguo Zhou, David C Schwartz, Adel M Talaat

Genetic diversity of canine olfactory receptors

Stéphanie Robin, Sandrine Tacher, Maud Rimbault, Amaury Vaysse, Stéphane Dréano, Catherine André, Christophe Hitte, Francis Galibert

Conservation in the face of diversity: multistrain analysis of an intracellular bacterium

Michael J Dark, David R Herndon, Lowell S Kappmeyer, Mikel P Gonzales, Elizabeth Nordeen, Guy H Palmer, Donald P Knowles, Kelly A Brayton

Dynamic evolution of V1R putative pheromone receptors between Mus musculus and Mus spretus

Vanessa C Kurzweil, Mike Getman, NISC Comparative Sequencing Program, Eric D Green, Robert P Lane

Exploring and dissecting genome-wide gene expression responses of Penicillium chrysogenum to phenylacetic acid consumption and penicillinG production

Diana M Harris, Zita A van der Krogt, Paul Klaassen, Leonie M Raamsdonk, Susanne Hage, Marco A van den Berg, Roel AL Bovenberg, Jack T Pronk, Jean-Marc Daran

Cloning, characterization and expression analysis of porcine microRNAs

Alavala Reddy, Yun Zheng, Guru Jagadeeswaran, Simone L Macmil, Wiley B Graham, Bruce A Roe, Udaya Desilva, Weixiong Zhang, Ramanjulu Sunkar

Desiccation survival in an Antarctic nematode: molecular analysis using expressed sequenced tags

Bishwo N Adhikari, Diana H Wall, Byron J Adams

MicroRNA transcriptome profiles during swine skeletal muscle development

Tara G McDaneld, Timothy PL Smith, Matthew E Doumit, Jeremy R Miles, Luiz L Coutinho, Tad S Sonstegard, Lakshmi K Matukumalli, Dan J Nonneman, Ralph T Wiedmann

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data

Theo A Knijnenburg, Jean-Marc G Daran, Marcel A van den Broek, Pascale AS Daran-Lapujade, Johannes H de Winde, Jack T Pronk, Marcel JT Reinders, Lodewyk FA Wessels

An Ac/Ds-mediated gene trap system for functional genomics in barley

Katina Lazarow, Stephanie Lütticke

Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

Thomas R J？rgensen, Theo Goosen, Cees AMJJ van den Hondel, Arthur FJ Ram, Jens JL Iversen

Tetraploid and hexaploid wheat varieties reveal large differences in expression of alpha-gliadins from homoeologous Gli-2 loci

Elma MJ Salentijn, Svetlana V Goryunova, Noor Bas, Ingrid M van der Meer, Hetty C van den Broeck, Thomas Bastien, Luud JWJ Gilissen, Marinus JM Smulders

Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

James C Wright, Deana Sugden, Sue Francis-McIntyre, Isabel Riba-Garcia, Simon J Gaskell, Igor V Grigoriev, Scott E Baker, Robert J Beynon, Simon J Hubbard

Revisiting the missing protein-coding gene catalog of the domestic dog

Thomas Derrien, Julien Thézé, Amaury Vaysse, Catherine André, Elaine A Ostrander, Francis Galibert, Christophe Hitte

Genome-wide analysis of chimpanzee genes with premature termination codons

Anna Wetterbom, Ulf Gyllensten, Lucia Cavelier, Tomas F Bergstr？m

The salivary gland transcriptome of the neotropical malaria vector Anopheles darlingi reveals accelerated evolution of genes relevant to hematophagy

Eric Calvo, Van M Pham, Osvaldo Marinotti, John F Andersen, José MC Ribeiro

An integrated approach for the systematic identification and characterization of heart-enriched genes with unknown functions

Shizuka Uchida, André Schneider, Marion Wiesnet, Benno Jungblut, Polina Zarjitskaya, Katharina Jenniches, Karsten Kreymborg, Werner Seeger, Thomas Braun

Influence of genetic background on the occurrence of chromosomal rearrangements in Saccharomyces cerevisiae

Emilie S Fritsch, Joseph Schacherer, Claudine Bleykasten-Grosshans, Jean-Luc Souciet, Serge Potier, Jacky de Montigny

Rapid high-throughput analysis of DNaseI hypersensitive sites using a modified Multiplex Ligation-dependent Probe Amplification approach

Thomas Ohnesorg, Stefanie Eggers, Wouter N Leonhard, Andrew H Sinclair, Stefan J White

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery

Chunlai Feng, Michihiro Araki, Ryo Kunimoto, Akiko Tamon, Hiroki Makiguchi, Satoshi Niijima, Gozoh Tsujimoto, Yasushi Okuno

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip？ expression data

Adriane Men？en, G？tz Edinger, Joachim R Grün, Ulrike Haase, Ria Baumgrass, Andreas Grützkau, Andreas Radbruch, Gerd-R Burmester, Thomas H？upl

FragIdent – Automatic identification and characterisation of cDNA-fragments

Dominik Seelow, Heike Goehler, Katrin Hoffmann

Implications of high level pseudogene transcription in Mycobacterium leprae

Diana L Williams, Richard A Slayden, Amol Amin, Alejandra N Martinez, Tana L Pittman, Alex Mira, Anirban Mitra, Valakunja Nagaraja, Norman E Morrison, Milton Moraes, Thomas P Gillis

Comparing genomic expression patterns across plant species reveals highly diverged transcriptional dynamics in response to salt stress

Harkamal Walia, Clyde Wilson, Abdelbagi M Ismail, Timothy J Close, Xinping Cui

Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development

Fiammetta Alagna, Nunzio D'Agostino, Laura Torchia, Maurizio Servili, Rosa Rao, Marco Pietrella, Giovanni Giuliano, Maria Chiusano, Luciana Baldoni, Gaetano Perrotta

Microbial comparative pan-genomics using binomial mixture models

Lars Snipen, Trygve Alm？y, David W Ussery

Generation, annotation, and analysis of ESTs from midgut tissue of adult female Anopheles stephensi mosquitoes

Deepak P Patil, Santosh Atanur, Dhiraj P Dhotre, D Anantharam, Vineet S Mahajan, Sandeep A Walujkar, Rakesh K Chandode, Girish J Kulkarni, Pankaj S Ghate, Abhishek Srivastav, Kannayakanahalli M Dayananda, Neha Gupta, Bhakti Bhagwat, Rajendra R Joshi, Devendra T Mourya, Milind S Patole, Yogesh S Shouche

Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens

Carla Risso, Jun Sun, Kai Zhuang, Radhakrishnan Mahadevan, Robert DeBoy, Wael Ismail, Susmita Shrivastava, Heather Huot, Sagar Kothari, Sean Daugherty, Olivia Bui, Christophe H Schilling, Derek R Lovley, Barbara A Methé

Transcriptional response of the model planctomycete Rhodopirellula baltica SH1T to changing environmental conditions

Patricia Wecker, Christine Klockow, Andreas Ellrott, Christian Quast, Philipp Langhammer, Jens Harder, Frank Gl？ckner

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences

Peter Meinicke

Hypoxic transcription gene profiles under the modulation of nitric oxide in nuclear run on-microarray and proteomics

Emeka I Igwe, Silke Essler, Natalie Al-Furoukh, Nathalie Dehne, Bernhard Brüne

Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis

Yongxin Chen, Jonathan AL Gelfond, Linda M McManus, Paula K Shireman

Molecular mechanisms of tungstate-induced pancreatic plasticity: a transcriptomics approach

Jordi Altirriba, Albert Barbera, Héctor Del Zotto, Belen Nadal, Sandra Piquer, Alex Sánchez-Pla, Juan J Gagliardino, Ramon Gomis

Weighted gene co-expression network analysis of the peripheral blood from Amyotrophic Lateral Sclerosis patients

Christiaan GJ Saris, Steve Horvath, Paul WJ van Vught, Michael A van Es, Hylke M Blauw, Tova F Fuller, Peter Langfelder, Joseph DeYoung, John HJ Wokke, Jan H Veldink, Leonard H van den Berg, Roel A Ophoff

Streptococcus pneumoniae nasopharyngeal colonization induces type I interferons and interferon-induced gene expression

Elizabeth A Joyce, Stephen J Popper, Stanley Falkow

Two distinct groups of porcine enteropathogenic Escherichia coli strains of serogroup O45 are revealed by comparative genomic hybridization and virulence gene microarray

Guillaume Bruant, Yongxiang Zhang, Philippe Garneau, Justin Wong, Chad Laing, John M Fairbrother, Victor PJ Gannon, Josée Harel

CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations

Bart PP van Houte, Thomas W Binsl, Hannes Hettling, Walter Pirovano, Jaap Heringa

PAVE: Program for assembling and viewing ESTs

Carol Soderlund, Eric Johnson, Matthew Bomhoff, Anne Descour

The relationship between the evolution of microRNA targets and the length of their UTRs

Chao Cheng, Nitin Bhardwaj, Mark Gerstein

Sequenced BAC anchored reference genetic map that reconciles the ten individual chromosomes of Brassica rapa

HyeRan Kim, Su Choi, Jina Bae, Chang Hong, Seo Lee, Md Hossain, Dan Van Nguyen, Mina Jin, Beom-Seok Park, Jea-Wook Bang, Ian Bancroft, Yong Lim

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