BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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MicroRNA expression profiling during the life cycle of the silkworm (Bombyx mori)

Shiping Liu, Liang Zhang, Qibin Li, Ping Zhao, Jun Duan, Daojun Cheng, Zhonghuai Xiang, Qingyou Xia

A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues

Queenie WT Chan, Robert Parker, Zhi Sun, Eric W Deutsch, Leonard J Foster

Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica

Shengxin Chang, Tiantian Yang, Tongqing Du, Yongjuan Huang, Jianmei Chen, Jiyong Yan, Jianbo He, Rongzhan Guan

Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis

Leda Mirbahai, Timothy D Williams, Huiqing Zhan, Zhiyuan Gong, J Kevin Chipman

Evolutionarily conserved bias of amino-acid usage refines the definition of PDZ-binding motif

Takahiko Chimura, Thomas Launey, Masao Ito

The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs

Peter Arensburger, Robert H Hice, Jennifer A Wright, Nancy L Craig, Peter W Atkinson

High resolution profiling of human exon methylation by liquid hybridization capture-based bisulfite sequencing

Junwen Wang, Hui Jiang, Guanyu Ji, Fei Gao, Mingzhi Wu, Jihua Sun, Huijuan Luo, Jinghua Wu, Renhua Wu, Xiuqing Zhang

An exonic insertion within Tex14 gene causes spermatogenic arrest in pigs

Anu Sironen, Pekka Uimari, Heli Venhoranta, Magnus Andersson, Johanna Vilkki

Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome

Raja Ragupathy, Rajkumar Rathinavelu, Sylvie Cloutier

Identification of gene expression changes associated with the initiation of diapause in the brain of the cotton bollworm, Helicoverpa armigera

Bin Bao, Wei-Hua Xu

Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element

David Hot, Stéphanie Slupek, Bérénice Wulbrecht, Anthony D'Hondt, Christine Hubans, Rudy Antoine, Camille Locht, Yves Lemoine

Characterization of age-related gene expression profiling in bone marrow and epididymal adipocytes

Li-Fen Liu, Wen-Jun Shen, Masami Ueno, Shailja Patel, Fredric B Kraemer

Identification of proprotein convertase substrates using genome-wide expression correlation analysis

Hannu Turpeinen, Sampo Kukkurainen, Kati Pulkkinen, Timo Kauppila, Kalle Ojala, Vesa P Hyt？nen, Marko Pesu

The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli

Colin T Archer, Jihyun F Kim, Haeyoung Jeong, Jin Park, Claudia E Vickers, Sang Lee, Lars K Nielsen

Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi

Kounthéa Phok, Annick Moisan, Dana Rinaldi, Nicolas Brucato, Agamemnon J Carpousis, Christine Gaspin, Béatrice Clouet-d'Orval

The phosducin-like protein PhLP1 impacts regulation of glycoside hydrolases and light response in Trichoderma reesei

Doris Tisch, Christian P Kubicek, Monika Schmoll

Identification of novel soybean microRNAs involved in abiotic and biotic stresses

Franceli R Kulcheski, Luiz FV de Oliveira, Lorrayne G Molina, Maurício P Almer？o, Fabiana A Rodrigues, Juliana Marcolino, Joice F Barbosa, Renata Stolf-Moreira, Alexandre L Nepomuceno, Francismar C Marcelino-Guimar？es, Ricardo V Abdelnoor, Leandro C Nascimento, Marcelo F Carazzolle, Gon？alo AG Pereira, Rogério Margis

Detecting copy number status and uncovering subclonal markers in heterogeneous tumor biopsies

Fabio Parisi, Stephan Ariyan, Deepak Narayan, Antonella Bacchiocchi, Kathleen Hoyt, Elaine Cheng, Fang Xu, Peining Li, Ruth Halaban, Yuval Kluger

Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing

Ling-Ling Gao, James K Hane, Lars G Kamphuis, Rhonda Foley, Bu-Jun Shi, Craig A Atkins, Karam B Singh

Transcriptional signatures of regulatory and toxic responses to benzo-[a]-pyrene exposure

Jacob J Michaelson, Saskia Trump, Susanne Rudzok, Carolin Gr？bsch, Danielle J Madureira, Franziska Dautel, Juliane Mai, Sabine Attinger, Kristin Schirmer, Martin von Bergen, Irina Lehmann, Andreas Beyer

Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction

Chuan-Yun Li, Wei-Zhen Zhou, Ping-Wu Zhang, Catherine Johnson, Liping Wei, George R Uhl

Functional genomics of the horn fly, Haematobia irritans (Linnaeus, 1758)

Lorena Torres, Consuelo Almazán, Nieves Ayllón, Ruth C Galindo, Rodrigo Rosario-Cruz, Héctor Quiroz-Romero, José de la Fuente

The mosaicism of plasmids revealed by atypical genes detection and analysis

Emanuele Bosi, Renato Fani, Marco Fondi

RSpred, a set of Hidden Markov Models to detect and classify the RIFIN and STEVOR proteins of Plasmodium falciparum

Nicolas Joannin, Yvonne Kallberg, Mats Wahlgren, Bengt Persson

Meta-analysis of muscle transcriptome data using the MADMuscle database reveals biologically relevant gene patterns

Daniel Baron, Emeric Dubois, Audrey Bihouée, Raluca Teusan, Marja Steenman, Philippe Jourdon, Armelle Magot, Yann Péréon, Reiner Veitia, Frédérique Savagner, Gérard Ramstein, Rémi Houlgatte

Large-scale RNAi screen of G protein-coupled receptors involved in larval growth, molting and metamorphosis in the red flour beetle

Hua Bai, Fang Zhu, Kapil Shah, Subba Palli

Mitochondrial genome deletions and minicircles are common in lice (Insecta: Phthiraptera)

Stephen L Cameron, Kazunori Yoshizawa, Atsushi Mizukoshi, Michael F Whiting, Kevin P Johnson

De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum

Joshua P Der, Michael S Barker, Norman J Wickett, Claude W dePamphilis, Paul G Wolf

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

Nicolas Blavet, Delphine Charif, Christine Oger-Desfeux, Gabriel AB Marais, Alex Widmer

Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals

Arong Luo, Aibing Zhang, Simon YW Ho, Weijun Xu, Yanzhou Zhang, Weifeng Shi, Stephen L Cameron, Chaodong Zhu

Structural variation in the chicken genome identified by paired-end next-generation DNA sequencing of reduced representation libraries

Hindrik HD Kerstens, Richard PMA Crooijmans, Bert W Dibbits, Addie Vereijken, Ron Okimoto, Martien AM Groenen

PNAC: a protein nucleolar association classifier

Michelle S Scott, Fran？ois-Michel Boisvert, Angus I Lamond, Geoffrey J Barton

Gene set enrichment analysis of microarray data from Pimephales promelas (Rafinesque), a non-mammalian model organism

Michael A Thomas, Luobin Yang, Barbara J Carter, Rebecca D Klaper

Integration of Genome-Wide Computation DRE Search, AhR ChIP-chip and Gene Expression Analyses of TCDD-Elicited Responses in the Mouse Liver

Edward Dere, Raymond Lo, Trine Celius, Jason Matthews, Timothy R Zacharewski

Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms

Kung-Yen Chang, David C Muddiman

The Trypanosoma cruzi Sylvio X10 strain maxicircle sequence: the third musketeer

Laura I Ruvalcaba-Trejo, Nancy R Sturm

Development of a novel multiplex DNA microarray for Fusarium graminearum and analysis of azole fungicide responses

Rayko Becher, Fabian Weihmann, Holger B Deising, Stefan GR Wirsel

Generating libraries of iTol2-end insertions at BAC ends using loxP and lox511 Tn10 transposons

Leighcraft A Shakes, Gembu Abe, Mugtaba A Eltayeb, Hope M Wolf, Koichi Kawakami, Pradeep K Chatterjee

Transcriptomic response of the red tide dinoflagellate, Karenia brevis, to nitrogen and phosphorus depletion and addition

Jeanine S Morey, Emily A Monroe, Amanda L Kinney, Marion Beal, Jillian G Johnson, Gary L Hitchcock, Frances M Van Dolah

The sex-biased brain: sexual dimorphism in gene expression in two species of songbirds

Sara Naurin, Bengt Hansson, Dennis Hasselquist, Yong-Hwan Kim, Staffan Bensch

Comparative analysis of information contents relevant to recognition of introns in many species

Hiroaki Iwata, Osamu Gotoh

A selective sweep of >8 Mb on chromosome 26 in the Boxer genome

Javier Quilez, Andrea D Short, Verónica Martínez, Lorna J Kennedy, William Ollier, Armand Sanchez, Laura Altet, Olga Francino

Genomic fluidity: an integrative view of gene diversity within microbial populations

Andrey O Kislyuk, Bart Haegeman, Nicholas H Bergman, Joshua S Weitz

Ploidy influences cellular responses to gross chromosomal rearrangements in saccharomyces cerevisiae

Paul P Jung, Emilie S Fritsch, Corinne Blugeon, Jean-Luc Souciet, Serge Potier, Sophie Lemoine, Joseph Schacherer, Jacky de Montigny

Minimal regulatory spaces in yeast genomes

Wei-Hua Chen, Wu Wei, Martin J Lercher

EST mining identifies proteins putatively secreted by the anthracnose pathogen Colletotrichum truncatum

Vijai Bhadauria, Sabine Banniza, Albert Vandenberg, Gopalan Selvaraj, Yangdou Wei

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

Lindsay R Dresang, Jeremy R Teuton, Huichen Feng, Jon M Jacobs, David G Camp, Samuel O Purvine, Marina A Gritsenko, Zhihua Li, Richard D Smith, Bill Sugden, Patrick S Moore, Yuan Chang

Comprehensive analysis of tandem amino acid repeats from ten angiosperm genomes

Yuan Zhou, Jing Liu, Lei Han, Zhi-Gang Li, Ziding Zhang

Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes

Laura Gomez-Valero, Christophe Rusniok, Sophie Jarraud, Benoit Vacherie, Zoé Rouy, Valerie Barbe, Claudine Medigue, Jerome Etienne, Carmen Buchrieser

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