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ISSN: 2333-9721
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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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AluScan: a method for genome-wide scanning of sequence and structure variations in the human genome

Lingling Mei, Xiaofan Ding, Shui-Ying Tsang, Frank W Pun, Siu-Kin Ng, Jianfeng Yang, Cunyou Zhao, Dezhi Li, Weiqing Wan, Chi-Hung Yu, Tze-Ching Tan, Wai-Sang Poon, Gilberto Leung, Ho-Keung Ng, Liwei Zhang, Hong Xue

Genome-wide expression assay comparison across frozen and fixed postmortem brain tissue samples

Maggie L Chow, Hai-Ri Li, Mary E Winn, Craig April, Cynthia C Barnes, Anthony Wynshaw-Boris, Jian-Bing Fan, Xiang-Dong Fu, Eric Courchesne, Nicholas J Schork

Genomic insights into an obligate epibiotic bacterial predator: Micavibrio aeruginosavorus ARL-13

Zhang Wang, Daniel E Kadouri, Martin Wu

Spatial analysis of biomineralization associated gene expression from the mantle organ of the pearl oyster Pinctada maxima

Luke D Gardner, David Mills, Aaron Wiegand, David Leavesley, Abigail Elizur

Array Comparative Genomic Hybridizations: Assessing the ability to recapture evolutionary relationships using an in silico approach

Luz B Gilbert, Lee Chae, Takao Kasuga, John W Taylor

Genome-wide gene expression analysis supports a developmental model of low temperature tolerance gene regulation in wheat (Triticum aestivum L.)

Debbie Laudencia-Chingcuanco, Seedhabadee Ganeshan, Frank You, Brian Fowler, Ravindra Chibbar, Olin Anderson

A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae

Dean A Baker, Tony Nolan, Bettina Fischer, Alex Pinder, Andrea Crisanti, Steven Russell

Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques

Anna J Moreland, Lisbeth A Guethlein, R Keith Reeves, Karl W Broman, R Paul Johnson, Peter Parham, David H O'Connor, Benjamin N Bimber

RNA-seq: technical variability and sampling

Lauren M McIntyre, Kenneth K Lopiano, Alison M Morse, Victor Amin, Ann L Oberg, Linda J Young, Sergey V Nuzhdin

A tissue-specific landscape of sense/antisense transcription in the mouse intestine

Ulrich C Klostermeier, Matthias Barann, Michael Wittig, Robert H？sler, Andre Franke, Olga Gavrilova, Benjamin Kreck, Christian Sina, Markus B Schilhabel, Stefan Schreiber, Philip Rosenstiel

Identification of SNP and SSR markers in eggplant using RAD tag sequencing

Lorenzo Barchi, Sergio Lanteri, Ezio Portis, Alberto Acquadro, Giampiero Valè, Laura Toppino, Giuseppe Rotino

Single nucleotide polymorphism discovery in elite north american potato germplasm

John P Hamilton, Candice N Hansey, Brett R Whitty, Kevin Stoffel, Alicia N Massa, Allen Van Deynze, Walter S De Jong, David S Douches, C Robin Buell

Comprehensive genetic dissection of wood properties in a widely-grown tropical tree: Eucalyptus

Jean-Marc Gion, Audrey Carouché, Sylvie Deweer, Franck Bedon, Frédérique Pichavant, Jean-Paul Charpentier, Henri Baillères, Philippe Rozenberg, Victor Carocha, Nina Ognouabi, Daniel Verhaegen, Jacqueline Grima-Pettenati, Philippe Vigneron, Christophe Plomion

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

Cristiano C Nunes, Malali Gowda, Joshua Sailsbery, Minfeng Xue, Feng Chen, Douglas E Brown, YeonYee Oh, Thomas K Mitchell, Ralph A Dean

Transcriptome profiling of chemosensory appendages in the malaria vector Anopheles gambiae reveals tissue- and sex-specific signatures of odor coding

R Pitts, David C Rinker, Patrick L Jones, Antonis Rokas, Laurence J Zwiebel

Chromatin structure characteristics of pre-miRNA genomic sequences

Shijia Zhu, Qinghua Jiang, Guohua Wang, Bo Liu, Mingxiang Teng, Yadong Wang

A genome scan for quantitative trait loci affecting cyanogenic potential of cassava root in an outbred population

Sukhuman Whankaew, Supannee Poopear, Supanath Kanjanawattanawong, Sithichoke Tangphatsornruang, Opas Boonseng, David A Lightfoot, Kanokporn Triwitayakorn

Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis

Daniela Kalhoefer, Sebastian Thole, Sonja Voget, Rüdiger Lehmann, Heiko Liesegang, Antje Wollher, Rolf Daniel, Meinhard Simon, Thorsten Brinkhoff

InterMitoBase: An annotated database and analysis platform of protein-protein interactions for human mitochondria

Zuguang Gu, Jie Li, Song Gao, Ming Gong, Junling Wang, Hua Xu, Chenyu Zhang, Jin Wang

Accuracy and differential bias in copy number measurement of CCL3L1 in association studies with three auto-immune disorders

Danielle Carpenter, Susan Walker, Natalie Prescott, Joost Schalkwijk, John AL Armour

Global analysis of gene expression in response to L-Cysteine deprivation in the anaerobic protozoan parasite Entamoeba histolytica

Afzal Husain, Ghulam Jeelani, Dan Sato, Tomoyoshi Nozaki

Directional RNA deep sequencing sheds new light on the transcriptional response of Anabaena sp. strain PCC 7120 to combined-nitrogen deprivation

Britt L Flaherty, F Van Nieuwerburgh, Steven R Head, James W Golden

An untargeted multi-technique metabolomics approach to studying intracellular metabolites of HepG2 cells exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin

Ainhoa Ruiz-Aracama, Ad Peijnenburg, Jos Kleinjans, Danyel Jennen, Joost van Delft, Caroline Hellfrisch, Arjen Lommen

Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach

Michal Mokry, Isa？c J Nijman, Anja van Dijken, Rene Benjamins, Renze Heidstra, Ben Scheres, Edwin Cuppen

454 sequencing of pooled BAC clones on chromosome 3H of barley

Kazuhiro Sato, Yuka Motoi, Nami Yamaji, Hideya Yoshida

A simple Bayesian estimate of direct RNAi gene regulation events from differential gene expression profiles

Paul A Wilson, Mathew Plucinski

Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.)

W Walter Lorenz, Rob Alba, Yuan-Sheng Yu, John M Bordeaux, Marta Sim？es, Jeffrey FD Dean

Implication of next-generation sequencing on association studies

Hoicheong Siu, Yun Zhu, Li Jin, Momiao Xiong

GiSAO.db: a database for ageing research

Edith Hofer, Gerhard T Laschober, Matthias Hackl, Gerhard G Thallinger, Günter Lepperdinger, Johannes Grillari, Pidder Jansen-Dürr, Zlatko Trajanoski

The characterisation of piRNA-related 19mers in the mouse

Harald M Oey, Neil A Youngson, Emma Whitelaw

Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

John P Délano-Frier, Hamlet Avilés-Arnaut, Kena Casarrubias-Castillo, Gabriela Casique-Arroyo, Paula A Castrillón-Arbeláez, Luis Herrera-Estrella, Julio Massange-Sánchez, Norma A Martínez-Gallardo, Fannie I Parra-Cota, Erandi Vargas-Ortiz, María G Estrada-Hernández

An RNA interference screen for identifying downstream effectors of the p53 and pRB tumour suppressor pathways involved in senescence

Emilie Rovillain, Louise Mansfield, Christopher J Lord, Alan Ashworth, Parmjit S Jat

Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing

Tianzuo Wang, Lei Chen, Mingui Zhao, Qiuying Tian, Wen-Hao Zhang

Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing

Peter L Chang, Joseph P Dunham, Sergey V Nuzhdin, Michelle N Arbeitman

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)

Prabin Bajgain, Bryce A Richardson, Jared C Price, Richard C Cronn, Joshua A Udall

New genomic resources for switchgrass: a BAC library and comparative analysis of homoeologous genomic regions harboring bioenergy traits

Christopher A Saski, Zhigang Li, Frank A Feltus, Hong Luo

Quantification of codon selection for comparative bacterial genomics

Adam C Retchless, Jeffrey G Lawrence

Detection of copy number variations in rice using array-based comparative genomic hybridization

Ping Yu, Caihong Wang, Qun Xu, Yue Feng, Xiaoping Yuan, Hanyong Yu, Yiping Wang, Shengxiang Tang, Xinghua Wei

Transcriptomic analysis of the interaction between Helianthus annuus and its obligate parasite Plasmopara halstedii shows single nucleotide polymorphisms in CRN sequences

Falah As-sadi, Sébastien Carrere, Quentin Gascuel, Thibaut Hourlier, David Rengel, Marie-Christine Le Paslier, Amandine Bordat, Marie-Claude Boniface, Dominique Brunel, Jér？me Gouzy, Laurence Godiard, Patrick Vincourt

Complete genome sequence of Brachyspira intermedia reveals unique genomic features in Brachyspira species and phage-mediated horizontal gene transfer

Therese H？fstr？m, Désirée S Jansson, Bo Segerman

Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus

Roberto A Barrero, Gabriel Keeble-Gagnère, Bing Zhang, Paula Moolhuijzen, Kazuho Ikeo, Yoshio Tateno, Takashi Gojobori, Felix D Guerrero, Ala Lew-Tabor, Matthew Bellgard

Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads

Matthew C Hale, Peng Xu, Julie Scardina, Paul A Wheeler, Gary H Thorgaard, Krista M Nichols

MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters

Bastiaan JH Jansen, Iziah E Sama, Dagmar Eleveld-Trancikova, Maaike A van Hout-Kuijer, Joop H Jansen, Martijn A Huynen, Gosse J Adema

New algorithm improves fine structure of the barley consensus SNP map

Jeffrey B Endelman

Influence of cell cycle on responses of MCF-7 cells to benzo[a]pyrene

Hamza Hamouchene, Volker M Arlt, Ian Giddings, David H Phillips

Histological and transcriptome-wide level characteristics of fetal myofiber hyperplasia during the second half of gestation in Texel and Ujumqin sheep

Hangxing Ren, Li Li, Hongwei Su, Lingyang Xu, Caihong Wei, Li Zhang, Hongbin Li, Wenzhong Liu, Lixin Du

SAMQA: error classification and validation of high-throughput sequenced read data

Thomas Robinson, Sarah Killcoyne, Ryan Bressler, John Boyle

Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling

Matthew D Dean, Geoffrey D Findlay, Michael R Hoopmann, Christine C Wu, Michael J MacCoss, Willie J Swanson, Michael W Nachman

A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella

Heiko Vogel, Boran Altincicek, Gernot Gl？ckner, Andreas Vilcinskas

Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna

Luisa Orsini, Mieke Jansen, Erika L Souche, Sarah Geldof, Luc De Meester

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