BMC Genomics - oalib

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ISSN: 2333-9721
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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes

Anding Zhang, Ming Yang, Pan Hu, Jiayan Wu, Bo Chen, Yafeng Hua, Jun Yu, Huanchun Chen, Jingfa Xiao, Meilin Jin

Effects of the total replacement of fish-based diet with plant-based diet on the hepatic transcriptome of two European sea bass (Dicentrarchus labrax) half-sibfamilies showing different growth rates with the plant-based diet

Florian Geay, Serena Ferraresso, Jose L Zambonino-Infante, Luca Bargelloni, Claire Quentel, Marc Vandeputte, Sachi Kaushik, Chantal L Cahu, David Mazurais

Venom gland transcriptomes of two elapid snakes (Bungarus multicinctus and Naja atra) and evolution of toxin genes

Yu Jiang, Yan Li, Wenhui Lee, Xun Xu, Yue Zhang, Ruoping Zhao, Yun Zhang, Wen Wang

Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley

Yada Chutimanitsakun, Rick W Nipper, Alfonso Cuesta-Marcos, Luis Cistué, Ann Corey, Tanya Filichkina, Eric A Johnson, Patrick M Hayes

Time-series clustering of gene expression in irradiated and bystander fibroblasts: an application of FBPA clustering

Shanaz A Ghandhi, Anshu Sinha, Marianthi Markatou, Sally A Amundson

MicroRNA profiling of rhesus macaque embryonic stem cells

Zhenghua Sun, Qiang Wei, Yanfeng Zhang, Xiechao He, Weizhi Ji, Bing Su

Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

Shannon CK Straub, Mark Fishbein, Tatyana Livshultz, Zachary Foster, Matthew Parks, Kevin Weitemier, Richard C Cronn, Aaron Liston

Gene expression profiles in rat mesenteric lymph nodes upon supplementation with Conjugated Linoleic Acid during gestation and suckling

Elisabet Selga, Francisco J Pérez-Cano, àngels Franch, Carolina Ramírez-Santana, Montserrat Rivero, Carlos J Ciudad, Cristina Castellote, Véronique Noé

Clostridium botulinum group III: a group with dual identity shaped by plasmids, phages and mobile elements

Hanna Skarin, Therese H？fstr？m, Josefina Westerberg, Bo Segerman

Copy number variation of microRNA genes in the human genome

Malgorzata Marcinkowska, Maciej Szymanski, Wlodzimierz J Krzyzosiak, Piotr Kozlowski

A systematic analysis of the skeletal muscle miRNA transcriptome of chicken varieties with divergent skeletal muscle growth identifies novel miRNAs and differentially expressed miRNAs

Tingting Li, Rimao Wu, Yong Zhang, Dahai Zhu

FungalRV: adhesin prediction and immunoinformatics portal for human fungal pathogens

Rupanjali Chaudhuri, Faraz Ansari, Muthukurussi Raghunandanan, Srinivasan Ramachandran

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes

Niina Haiminen, F Feltus, Laxmi Parida

Differences in TCDD-elicited gene expression profiles in human HepG2, mouse Hepa1c1c7 and rat H4IIE hepatoma cells

Edward Dere, Andrea W Lee, Lyle D Burgoon, Timothy R Zacharewski

Interactions of a pesticide/heavy metal mixture in marine bivalves: a transcriptomic assessment

Francesco Dondero, Mohamed Banni, Alessandro Negri, Lara Boatti, Alessandro Dagnino, Aldo Viarengo

Comparative supragenomic analyses among the pathogens Staphylococcus aureus, Streptococcus pneumoniae, and Haemophilus influenzae Using a modification of the finite supragenome model

Robert Boissy, Azad Ahmed, Benjamin Janto, Josh Earl, Barry G Hall, Justin S Hogg, Gordon D Pusch, Luisa N Hiller, Evan Powell, Jay Hayes, Susan Yu, Sandeep Kathju, Paul Stoodley, J Christopher Post, Garth D Ehrlich, Fen Z Hu

A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus

Leandro G Neves, Eva MC Mamani, Acelino C Alfenas, Matias Kirst, Dario Grattapaglia

Deep sequencing reveals the complex and coordinated transcriptional regulation of genes related to grain quality in rice cultivars

R C Venu, M V Sreerekha, Kan Nobuta, André Beló, Yuese Ning, Gynheung An, Blake C Meyers, Guo-Liang Wang

Genomic insight into the common carp (Cyprinus carpio) genome by sequencing analysis of BAC-end sequences

Peng Xu, Jiongtang Li, Yan Li, Runzi Cui, Jintu Wang, Jian Wang, Yan Zhang, Zixia Zhao, Xiaowen Sun

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

Sukhjiwan Kaur, Noel OI Cogan, Luke W Pembleton, Maiko Shinozuka, Keith W Savin, Michael Materne, John W Forster

Recent acquisition of imprinting at the rodent Sfmbt2 locus correlates with insertion of a large block of miRNAs

Qianwei Wang, Jacqueline Chow, Jenny Hong, Anne Smith, Carol Moreno, Peter Seaby, Paul Vrana, Kamelia Miri, Joon Tak, Eu Ddeum Chung, Gabriela Mastromonaco, Isabella Caniggia, Susannah Varmuza

Transcriptomic assessment of resistance to effects of an aryl hydrocarbon receptor (AHR) agonist in embryos of Atlantic killifish (Fundulus heteroclitus) from a marine Superfund site

Marjorie F Oleksiak, Sibel I Karchner, Matthew J Jenny, Diana G Franks, David B Mark Welch, Mark E Hahn

Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome

Bonnie A Fraser, Cameron J Weadick, Ilana Janowitz, F Helen Rodd, Kimberly A Hughes

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing

Jordi Durban, Paula Juárez, Yamileth Angulo, Bruno Lomonte, Marietta Flores-Diaz, Alberto Alape-Girón, Mahmood Sasa, Libia Sanz, José M Gutiérrez, Joaquín Dopazo, Ana Conesa, Juan J Calvete

Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows

Arun Kommadath, Henri Woelders, Bonne Beerda, Herman A Mulder, Agnes AC de Wit, Roel F Veerkamp, Marinus FW te Pas, Mari A Smits

First complete genome sequence of infectious laryngotracheitis virus

Sang-Won Lee, Philip F Markham, John F Markham, Ivonne Petermann, Amir H Noormohammadi, Glenn F Browning, Nino P Ficorilli, Carol A Hartley, Joanne M Devlin

Identification of novel target genes of nerve growth factor (NGF) in human mastocytoma cell line (HMC-1 (V560G c-Kit)) by transcriptome analysis

Priyanka Dutta, Alexandra Koch, Bjoern Breyer, Heike Schneider, Oliver Dittrich-Breiholz, Michael Kracht, Teruko Tamura

Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus

Kuo-Hsiang Tang, Kerrie Barry, Olga Chertkov, Eileen Dalin, Cliff S Han, Loren J Hauser, Barbara M Honchak, Lauren E Karbach, Miriam L Land, Alla Lapidus, Frank W Larimer, Natalia Mikhailova, Samuel Pitluck, Beverly K Pierson, Robert E Blankenship

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain

Preethi H Gunaratne, Ya-Chi Lin, Ashley L Benham, Jenny Drnevich, Cristian Coarfa, Jayantha B Tennakoon, Chad J Creighton, Jong H Kim, Aleksandar Milosavljevic, Michael Watson, Sam Griffiths-Jones, David F Clayton

The development and characterization of a 60K SNP chip for chicken

Martien AM Groenen, Hendrik-Jan Megens, Yalda Zare, Wesley C Warren, LaDeana W Hillier, Richard PMA Crooijmans, Addie Vereijken, Ron Okimoto, William M Muir, Hans H Cheng

The testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalent

Leah M Prentice, Xavier d'Anglemont de Tassigny, Steven McKinney, Teresa Ruiz de Algara, Damian Yap, Gulisa Turashvili, Steven Poon, Margaret Sutcliffe, Pat Allard, Angela Burleigh, John Fee, David G Huntsman, William H Colledge, Samuel AJ Aparicio

Genomic features and computational identification of human microRNAs under long-range developmental regulation

Ying Sheng, Christopher Previti

Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome

Yajuan Zeng, Joann Conner, Peggy Ozias-Akins

The mitochondrial genome of the ascalaphid owlfly Libelloides macaronius and comparative evolutionary mitochondriomics of neuropterid insects

Enrico Negrisolo, Massimiliano Babbucci, Tomaso Patarnello

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

Susanne U Franssen, Roshan P Shrestha, Andrea Br？utigam, Erich Bornberg-Bauer, Andreas PM Weber

Preferential regulation of miRNA targets by environmental chemicals in the human genome

Xudong Wu, Yijiang Song

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing

André Gilles, Emese Meglécz, Nicolas Pech, Stéphanie Ferreira, Thibaut Malausa, Jean-Fran？ois Martin

A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly

Yan Wang, Silong Sun, Bo Liu, Hui Wang, Jie Deng, Yongcui Liao, Qian Wang, Feng Cheng, Xiaowu Wang, Jian Wu

Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing

Stefan Taudien, Karol Szafranski, Marius Felder, Marco Groth, Klaus Huse, Francesca Raffaelli, Andreas Petzold, Xinmin Zhang, Philip Rosenstiel, Jochen Hampe, Stefan Schreiber, Matthias Platzer

Genome-level homology and phylogeny of Shewanella (Gammaproteobacteria: lteromonadales: Shewanellaceae)

Rebecca B Dikow

Escherichia coli genome-wide promoter analysis: Identification of additional AtoC binding target elements

Eleftherios Pilalis, Aristotelis A Chatziioannou, Asterios I Grigoroudis, Christos A Panagiotidis, Fragiskos N Kolisis, Dimitrios A Kyriakidis

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development

Ping Liang, Fei Song, Srimoyee Ghosh, Evan Morien, Maochun Qin, Saleh Mahmood, Kyoko Fujiwara, Jun Igarashi, Hiroki Nagase, William A Held

Identification of errors introduced during high throughput sequencing of the T cell receptor repertoire

Phuong Nguyen, Jing Ma, Deqing Pei, Caroline Obert, Cheng Cheng, Terrence L Geiger

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

José Blanca, Joaquín Ca？izares, Cristina Roig, Pello Ziarsolo, Fernando Nuez, Belén Picó

Characterization of statistical features for plant microRNA prediction

Vivek Thakur, Samart Wanchana, Mercedes Xu, Richard Bruskiewich, William Quick, Axel Mosig, Xin-Guang Zhu

The genetic interaction network of CCW12, a Saccharomyces cerevisiae gene required for cell wall integrity during budding and formation of mating projections

Enrico Ragni, Heidi Piberger, Christine Neupert, Jesús García-Cantalejo, Laura Popolo, Javier Arroyo, Markus Aebi, Sabine Strahl

Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins

Pierre Dehoux, Rhonda Flores, Catherine Dauga, Guangming Zhong, Agathe Subtil

Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1

Zen H Lu, Alex di Domenico, Steven H Wright, Pamela A Knight, C Bruce A Whitelaw, Alan D Pemberton

Transcriptional profiling identifies differentially expressed genes in developing turkey skeletal muscle

Kelly RB Sporer, Robert J Tempelman, Catherine W Ernst, Kent M Reed, Sandra G Velleman, Gale M Strasburg

©2008-2020 OALib, Inc | Public user content licensed CC-BY 4.0 unless otherwise specified. OALib ISSN Online: 2333-9721 OALib ISSN Print: 2333-9705