Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells

Jae K Lee, Kimberly J Bussey, Fuad G Gwadry, William Reinhold, Gregory Riddick, Sandra L Pelletier, Satoshi Nishizuka, Gergely Szakacs, Jean-Phillipe Annereau, Uma Shankavaram, Samir Lababidi, Lawrence H Smith, Michael M Gottesman, John N Weinstein

NIH names computational boss

Willie Schatz

Gene therapy by mRNA stabilization?

Tudor P Toma

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Jennifer L Reed, Thuy D Vo, Christophe H Schilling, Bernhard O Palsson

A high performance test of differential gene expression for oligonucleotide arrays

William J Lemon, Sandya Liyanarachchi, Ming You

Optimization of oligonucleotide arrays and RNA amplification protocols for analysis of transcript structure and alternative splicing

John Castle, Phil Garrett-Engele, Christopher D Armour, Sven J Duenwald, Patrick M Loerch, Michael R Meyer, Eric E Schadt, Roland Stoughton, Mark L Parrish, Daniel D Shoemaker, Jason M Johnson

Time- and exercise-dependent gene regulation in human skeletal muscle

Alexander C Zambon, Erin L McDearmon, Nathan Salomonis, Karen M Vranizan, Kirsten L Johansen, Deborah Adey, Joseph S Takahashi, Morris Schambelan, Bruce R Conklin

Euro research area agreement

Stephen Pincock

Urchin, meet starfish

Cathy Holding

Members of the gut community

Jonathan B Weitzman

Seeing chordate evolution through the Ciona genome sequence

Cristian Ca？estro, Susan Bassham, John H Postlethwait

Digital biology: challenges remain

Eugene Russo

US DOE presents priorities

Eugene Russo

Finding the functional gems in plant genomes

Alexandra M Jones, Murray Grant

Extending knowledge of Escherichia coli metabolism by modeling and experiment

Eberhard O Voit, Monica Riley

Iron overload lifted

Cathy Holding

Yeast functional genomics and cell biology: no longer in the dark

Helena Friesen, Jonathan S Millman, Brenda J Andrews

Expressed sequence tag analysis in Cycas, the most primitive living seed plant

Eric D Brenner, Dennis W Stevenson, Richard W McCombie, Manpreet S Katari, Stephen A Rudd, Klaus FX Mayer, Peter M Palenchar, Suzan J Runko, Richard W Twigg, Guangwei Dai, Rob A Martienssen, Phillip N Benfey, Gloria M Coruzzi

Articles selected by Faculty of 1000: identifying pol III-dependent genes; entomopathogen genome; microbial genome dynamics; profiling ES cells; gene expression regulation by small RNAs

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

M Hild, B Beckmann, SA Haas, B Koch, V Solovyev, C Busold, K Fellenberg, M Boutros, M Vingron, F Sauer, JD Hoheisel, R Paro

Articles selected by Faculty of 1000: chemical modification analysis of siRNAs; allele-specific variation in gene expression; gut parasite comparative genomics; functional promoter variants; microRNA finction in leaf development

Genetics and functional genomics of type 2 diabetes mellitus

Ayo Toye, Dominique Gauguier

The septins

Makoto Kinoshita

Whole genome knockout library

Cathy Holding

Articles selected by Faculty of 1000: Arabidopsis transcription activity analysis; yeast mitochondial proteome; metabolomic survey in Bacillus subtilis; Nanoarchaeum equitans genome sequence; screen for metastatic behvavior in Drosophila

Articles selected by Faculty of 1000: Drosophila protein interaction map; profiling the mammalian AP-1 pathway; chromophore-assisted light inactivation of proteins in vivo; protein design; nucleolar associations

Detergent-resistant membranes and the protein composition of lipid rafts

Anthony I Magee, Ingela Parmryd

Is prokaryotic complexity limited by accelerated growth inregulatory overhead?

Larry J Croft, Martin J Lercher, Michael J Gagen, John S Mattick

Asthma investigators begin to reap the fruits of genomics

David J Erle, Yee Yang

MGED comes of age

Helen C Causton, Laurence Game

Articles selected by Faculty of 1000: CNS gene-expression atlas; finding Cdk1 targets; metabolic labeling C. elegans and Drosophila; allele-specific silencing by RNAi; identifying long-range enhancers

Frontiers in plant genetics

Sarah Hake

The not-so-humble worm

Catriona Crombie, Ariel Junio, Andrew Fraser

Worm reanimation checkpoint

David Secko

Diphtheria exposed during comeback

Cathy Holding

Fly screen

Cathy Holding

How many genes in a genome?

Brian Oliver, Benoit Leblanc

Articles selected by Faculty of 1000: profiling human and chimpanzee brains; genome-wide search for cellular systems; crossover control in C. elegans; RNA role in prion disease; self-assembly of protein arrays

Multi-species sequence comparison: the next frontier in genome annotation

Inna Dubchak, Kelly Frazer

Spiralians in the limelight

Detlev Arendt

Toward an understanding of the structural basis of translation

Joachim Frank

For the good of the state

Gregory A Petsko

Expressed sequence tag profiling identifies developmental and anatomic partitioning of gene expression in the mouse prostate

Denise E Abbott, Colin Pritchard, Nigel J Clegg, Camari Ferguson, Ruth Dumpit, Robert A Sikes, Peter S Nelson

Germany's genome boost

Jane Burgermeister

Antiterror ethics code urged

Anna Fazackerley

Multi-level response of the yeast genome to glucose

Ruud Geladé, Sam Van de Velde, Patrick Van Dijck, Johan M Thevelein

Sleeping dogs

Gregory A Petsko

Computational prediction of transcription-factor binding site locations

Martha L Bulyk

Integrating computationally assembled mouse transcript sequences with the Mouse Genome Informatics (MGI) database

Yunxia Zhu, Benjamin L King, Babak Parvizi, Brian P Brunk, Christian J Stoeckert, John Quackenbush, Joel Richardson, Carol J Bult

Whole-genome screening indicates a possible burst of formation of processed pseudogenes and Alu repeats by particular L1 subfamilies in ancestral primates

Kazuhiko Ohshima, Masahira Hattori, Tetsusi Yada, Takashi Gojobori, Yoshiyuki Sakaki, Norihiro Okada