Genome Biology - oalib

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Genome Biology

ISSN Print: 1465-6906

ISSN Online:

主页: http://genomebiology.com

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Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development

Michael F Covington, Julin N Maloof, Marty Straume, Steve A Kay, Stacey L Harmer

Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

Sandip Paul, Sumit K Bag, Sabyasachi Das, Eric T Harvill, Chitra Dutta

Correction: Statistical modeling for selecting housekeeper genes

Aniko Szabo, Charles M Perou, Mehmet Karaca, Laurent Perreard, Robert Palais, John F Quackenbush, Philip S Bernard

When bubbles burst

Gregory A Petsko

Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarrays

Shin Lin, Benilton Carvalho, David J Cutler, Dan E Arking, Aravinda Chakravarti, Rafael A Irizarry

The impact of the neisserial DNA uptake sequences on genome evolution and stability

Todd J Treangen, Ole Ambur, Tone Tonjum, Eduardo PC Rocha

Whole proteome identification of plant candidate G-protein coupled receptors in Arabidopsis, rice, and poplar: computational prediction and in-vivo protein coupling

Timothy E Gookin, Junhyong Kim, Sarah M Assmann

Genomic context analysis in Archaea suggests previously unrecognized links between DNA replication and translation

Jonathan Berthon, Diego Cortez, Patrick Forterre

Uncovering protein interaction in abstracts and text using a novel linear model and word proximity networks

Alaa Abi-Haidar, Jasleen Kaur, Ana Maguitman, Predrag Radivojac, Andreas Rechtsteiner, Karin Verspoor, Zhiping Wang, Luis M Rocha

Loss of genes implicated in gastric function during platypus evolution

Gonzalo R Ordo？ez, LaDeana W Hillier, Wesley C Warren, Frank Grützner, Carlos López-Otín, Xose S Puente

Glypicans

Jorge Filmus, Mariana Capurro, Jonathan Rast

A computational model of gene expression reveals early transcriptional events at the subtelomeric regions of the malaria parasite, Plasmodium falciparum

Matthias Scholz, Martin J Fraunholz

Systems biology-defined NF-κB regulons, interacting signal pathways and networks are implicated in the malignant phenotype of head and neck cancer cell lines differing in p53 status

Bin Yan, Guang Chen, Kunal Saigal, Xinping Yang, Shane T Jensen, Carter Van Waes, Christian J Stoeckert, Zhong Chen

The right to be wrong

Gregory A Petsko

No evidence of a Neanderthal contribution to modern human diversity

Jason A Hodgson, Todd R Disotell

Lifting the veil on the transcriptome

Kevin P Callahan, J Butler

Sequence-based prediction of protein-protein interactions by means of codon usage

Hamed Najafabadi, Reza Salavati

Evolution of insect proteomes: insights into synapse organization and synaptic vesicle life cycle

Chava Yanay, Noa Morpurgo, Michal Linial

Toward more effective gene delivery

Hannah H Chen, Ryan Cawood, Leonard W Seymour

Deciphering histone 2A deubiquitination

Michael J Clague, Judy M Coulson, Sylvie Urbé

Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs

Alejandro Panjkovich, Francisco Melo, Marc A Marti-Renom

MetaReg: a platform for modeling, analysis and visualization of biological systems using large-scale experimental data

Igor Ulitsky, Irit Gat-Viks, Ron Shamir

OntoGene in BioCreative II

Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Simon Clematide, Michael Hess, Jean-Marc von Allmen, Pierre Parisot, Martin Romacker, Therese Vachon

Systems biology meets stress ecology: linking molecular and organismal stress responses in Daphnia magna

Lars-Henrik Heckmann, Richard M Sibly, Richard Connon, Helen L Hooper, Thomas H Hutchinson, Steve J Maund, Christopher J Hill, Anthony Bouetard, Amanda Callaghan

MicroRNA, sex determination and floral meristem determinacy in maize

Jo Banks

Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi

Nora Khaldi, Jér？me Collemare, Marc-Henri Lebrun, Kenneth H Wolfe

Adipose tissue transcriptomic signature highlights the pathological relevance of extracellular matrix in human obesity

Corneliu Henegar, Joan Tordjman, Vincent Achard, Danièle Lacasa, Isabelle Cremer, Michèle Guerre-Millo, Christine Poitou, Arnaud Basdevant, Vladimir Stich, Nathalie Viguerie, Dominique Langin, Pierre Bedossa, Jean-Daniel Zucker, Karine Clement

UTILLdb, a Pisum sativum in silico forward and reverse genetics tool

Marion Dalmais, Julien Schmidt, Christine Le Signor, Francoise Moussy, Judith Burstin, Vincent Savois, Gregoire Aubert, Veronique Brunaud, Yannick de Oliveira, Cecile Guichard, Richard Thompson, Abdelhafid Bendahmane

Epigenomes under scrutiny

Jacqueline E Mermoud

Not debatable

Gregory A Petsko

Assignment of isochores for all completely sequenced vertebrate genomes using a consensus

Thorsten Schmidt, Dmitrij Frishman

Anni 2.0: a multipurpose text-mining tool for the life sciences

Rob Jelier, Martijn J Schuemie, Antoine Veldhoven, Lambert CJ Dorssers, Guido Jenster, Jan A Kors

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

Sara Mostafavi, Debajyoti Ray, David Warde-Farley, Chris Grouios, Quaid Morris

A race through the maze of genomic evidence

Timothy R Hughes, Frederick P Roth

An en masse phenotype and function prediction system for Mus musculus

Murat Ta？an, Weidong Tian, David P Hill, Francis D Gibbons, Judith A Blake, Frederick P Roth

Consistent probabilistic outputs for protein function prediction

Guillaume Obozinski, Gert Lanckriet, Charles Grant, Michael I Jordan, William Noble

Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia

Li Wei Chang, Jacqueline E Payton, Wenlin Yuan, Timothy J Ley, Rakesh Nagarajan, Gary D Stormo

Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling

Scott H Robbins, Thierry Walzer, Doulaye Dembélé, Christelle Thibault, Axel Defays, Gilles Bessou, Huichun Xu, Eric Vivier, MacLean Sellars, Philippe Pierre, Franck R Sharp, Susan Chan, Philippe Kastner, Marc Dalod

Individual mRNA expression profiles reveal the effects of specific microRNAs

Amit Arora, David AC Simpson

The Groucho/TLE/Grg family of transcriptional co-repressors

Barbara H Jennings, David Ish-Horowicz

Abundant and species-specific DINE-1 transposable elements in 12 Drosophila genomes

Hsiao-Pei Yang, Daniel A Barbash

Gene expression-based screening for inhibitors of PDGFR signaling

Alena A Antipova, Brent R Stockwell, Todd R Golub

CPSARST: an efficient circular permutation search tool applied to the detection of novel protein structural relationships

Wei-Cheng Lo, Ping-Chiang Lyu

Automating curation using a natural language processing pipeline

Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Richard Tobin, Xinglong Wang

A rational approach to cancer therapy

Kylie L Gorringe, Ian G Campbell

The genome sequence of Podospora anserina, a classic model fungus

Mathieu Paoletti, Sven J Saupe

Porin new light onto chromatin and nuclear organization

Lee E Finlan, Wendy A Bickmore

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