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Evolutionary Bioinformatics

ISSN Print: 1176-9343

ISSN Online:

主页: http://www.la-press.com/evolutionary-bioinformatics-journal-j17

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Circulation of Human Respiratory Syncytial Virus Strains Among Hospitalized Children with Acute Lower Respiratory Infection in Malaysia

Mohammad Reza Etemadi,Zamberi Sekawi,Norlijah Othman,Munn-Sann Lye

Design of Synthetic Genetic Oscillators Using Evolutionary Optimization

Yen-Chang Chang,Chun-Liang Lin,Tanagorn Jennawasin

EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes

Tanja Magoc,Derrick Wood,Steven L. Salzberg

TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats

Tomasz Gambin,Micha？ Startek,Krzysztof Walczak,Jaros？aw Paszek

A Proximity-Based Method to Identify Genomic Regions Correlated with a Continuously Varying Environmental Variable

Cornelia Di Gaetano,Giuseppe Matullo,Alberto Piazza,Moreno Ursino

The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway

Minghui Wang,Qishan Wang,Zhen Wang,Qingping Wang

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-off on Phenotype Robustness in Biological Networks Part I: Gene Regulatory Networks in Systems and Evolutionary Biology

Bor-Sen Chen,Ying-Po Lin

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Tradeoff on Phenotype Robustness in Biological Networks Part II: Ecological Networks

Bor-Sen Chen,Ying-Po Lin

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology

Bor-Sen Chen,Ying-Po Lin

CMCpy: Genetic Code-Message Coevolution Models in Python

Peter J. Becich,Brian P. Stark,Harish S. Bhat,David H. Ardell

A Tool Preference Choice Method for RNA Secondary Structure Prediction by SVM with Statistical Tests

Chiou-Yi Hor,Chang-Biau Yang,Chia-Hung Chang,Chiou-Ting Tseng

Inference of Self-Regulated Transcriptional Networks by Comparative Genomics

Joseph P. Cornish, Fialelei Matthews, Julien R. Thomas and Ivan Erill

A Lossy Compression Technique Enabling Duplication-Aware Sequence Alignment

Valerio Freschi and Alessandro Bogliolo

Evolutionary Genomics of Genes Involved in Olfactory Behavior in the Drosophila melanogaster Species Group

Nicolás Lavagnino, Fran ois Serra, Leonardo Arbiza, Hernán Dopazo and Esteban Hasson

Evolution of Type II Antifreeze Protein Genes in Teleost Fish: A Complex Scenario Involving Lateral Gene Transfers and Episodic Directional Selection

Ulf Sorhannus

The Chordate Proteome History Database

Anthony Levasseur, Julien Paganini, Jacques Dainat, Julie D. Thompson, Olivier Poch, Pierre Pontarotti and Philippe Gouret

Determinants of Exon-Level Evolutionary Rates in Arabidopsis Species

Gideon C.-T. Wu, and Feng-Chi Chen

Design of Synthetic Genetic Oscillators Using Evolutionary Optimization

Yen-Chang Chang, Chun-Liang Lin and Tanagorn Jennawasin

Evolution of the RALF Gene Family in Plants: Gene Duplication and Selection Patterns

Jun Cao, and Feng Shi

Testing Synchrony in Historical Biogeography: The Case of New World Primates and Hystricognathi Rodents

Leticia Loss-Oliveira, Barbara O. Aguiar and Carlos G. Schrago*

Genome-Wide Survey of Ds Exonization to Enrich Transcriptomes and Proteomes in Plants

Li-yu Daisy Liu and Yuh-Chyang Charng

PhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral Sequences

Melissa M. Norstr m, Mattia C.F. Prosperi, Rebecca R. Gray, Annika C. Karlsson and Marco Salemi

TIRfinder: A Web Tool for Mining Class II Transposons Carrying Terminal Inverted Repeats

Tomasz Gambin, Micha Startek, Krzysztof Walczak, Jaros aw Paszek, Dariusz Grzebelus and Anna Gambin

Selection of Marker Genes Using Whole-Genome DNA Polymorphism Analysis

Harry M. Bohle and Toni Gabaldón

MiIP: The Monomer Identification and Isolation Program

Christopher Bun, William Ziccardi, Jeffrey Doering and Catherine Putonti

RY-Coding and Non-Homogeneous Models Can Ameliorate the Maximum-Likelihood Inferences From Nucleotide Sequence Data with Parallel Compositional Heterogeneity

Sohta A. Ishikawa, Yuji Inagaki, and Tetsuo Hashimoto

EvoluCode: Evolutionary Barcodes as a Unifying Framework for Multilevel Evolutionary Data

Benjamin Linard, Ngoc Hoan Nguyen, Francisco Prosdocimi, Olivier Poch and Julie D. Thompson

Inferring the Phylogeny of Bovidae Using Mitochondrial DNA Sequences: Resolving Power of Individual Genes Relative to Complete Genomes

Ibrahim A. Arif, Mohammad A. Bakir and Haseeb A. Khan

TreeCmp: Comparison of Trees in Polynomial Time

Damian Bogdanowicz, Krzysztof Giaro and Borys Wróbel

BS-KNN: An Effective Algorithm for Predicting Protein Subchloroplast Localization

Jing Hu and Xianghe Yan

A Novel Multi-Scale Modeling Approach to Infer Whole Genome Divergence

Eli Reuveni and Alessandro Giuliani

Phylogenetic Analysis and Comparative Genomics of Purine Riboswitch Distribution in Prokaryotes

Payal Singh and Supratim Sengupta

A Proximity-Based Method to Identify Genomic Regions Correlated with a Continuously Varying Environmental Variable

Cornelia Di Gaetano, Giuseppe Matullo, Alberto Piazza, Moreno Ursino and Mauro Gasparini

PhyloMarker—A Tool for Mining Phylogenetic Markers Through Genome Comparison: Application of the Mouse Lemur (Genus Microcebus) Phylogeny

Runhua Lei, Thaine W. Rowley, Lifeng Zhu, Carolyn A. Bailey, Shannon E. Engberg, Mindy L. Wood, Mary C. Christman, George H. Perry, Edward E. Louis Jr and Guoqing Lu

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-offs on Phenotype Robustness in Biological Networks. Part III: Synthetic Gene Networks in Synthetic Biology

Bor-Sen Chen and Ying-Po Lin

LCGbase: A Comprehensive Database for Lineage-Based Co-regulated Genes

Dapeng Wang, Yubin Zhang, Zhonghua Fan, Guiming Liu and Jun Yu

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Tradeoff on Phenotype Robustness in Biological Networks Part II: Ecological Networks

Bor-Sen Chen and Ying-Po Lin

Evolutionary Analysis of Sequence Divergence and Diversity of Duplicate Genes in Aspergillus fumigatus

Ence Yang, Amanda M. Hulse and James J. Cai

Translation Efficiency in Upstream Region of microRNA Targets in Arabidopsis thaliana

Wanjun Gu, Chuanying Zhai, Xiaofei Wang, Xueying Xie, Gurunadh Parinandi, and Tong Zhou

Efficient Feature Selection and Multiclass Classification with Integrated Instance and Model Based Learning

Zhenqiu Liu, Halima Bensmail and Ming Tan

Phylogenomic Study of Lipid Genes Involved in Microalgal Biofuel Production—Candidate Gene Mining and Metabolic Pathway Analyses

Namrata Misra, Prasanna Kumar Panda, Bikram Kumar Parida and Barada Kanta Mishra

Impact of the Partitioning Scheme on Divergence Times Inferred from Mammalian Genomic Data Sets

Carolina M. Voloch and Carlos G. Schrago

EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes

Tanja Magoc, Derrick Wood and Steven L. Salzberg

Promoter Sequences Prediction Using Relational Association Rule Mining

Gabriela Czibula, Maria-Iuliana Bocicor and Istvan Gergely Czibula

A Unifying Mathematical Framework for Genetic Robustness, Environmental Robustness, Network Robustness and their Trade-off on Phenotype Robustness in Biological Networks Part I: Gene Regulatory Networks in Systems and Evolutionary Biology

Bor-Sen Chen and Ying-Po Lin

Cross-Genome Clustering of Human and C. elegans G-Protein Coupled Receptors

Balasubramanian Nagarathnam, Singaravelu Kalaimathy, Veluchamy Balakrishnan and Ramanathan Sowdhamini

Reliable Phylogenetic Trees Building: A New Web Interface for FIGENIX

Julien Paganini and Philippe Gouret

Cloud Computing for Comparative Genomics with Windows Azure Platform

Insik Kim, Jae-Yoon Jung, Todd F. DeLuca, Tristan H. Nelson and Dennis P. Wall

The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway

Minghui Wang, Qishan Wang, Zhen Wang, Qingping Wang, Xiangzhe Zhang and Yuchun Pan

CMCpy: Genetic Code-Message Coevolution Models in Python

Peter J. Becich, Brian P. Stark, Harish S. Bhat and David H. Ardell

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