Correlation Patterns Between DNA Methylation and Gene Expression in The Cancer Genome Atlas

Hong Seo Lim,John CG Spainhour,Peng Qiu,Soojin V Yi

Reviewers for Cancer Informatics: 2018

Clinically Relevant Biomarker Discovery in High-Risk Recurrent Neuroblastoma

Cecilie L？kke,Christer Einvik,Peter Utnes,Trond Fl？gstad

Predicting Outcomes in Patients With Diffuse Large B-Cell Lymphoma Treated With Standard of Care

Aaron Galaznik,Christian Reich,Eldar Allakhverdiiev,Greg Hather,Greg Klebanov,Yaping Shou,Yuriy Khoma

Predicting Complete Remission of Acute Myeloid Leukemia: Machine Learning Applied to Gene Expression

Daoud Meerzaman,Noam Auslander,Ophir Gal,Yu Fan

Development and Validation of a Nomogram Prognostic Model for Patients With Advanced Non-Small-Cell Lung Cancer

Bo Ci,Bo Yao,David E Gerber,David H Johnson,Fang Liz Zhou,Guanghua Xiao,Joan H Schiller,Rong Lu,Stacy Wang,Sunny Lai,Tao Wang,Xiaohan Gao,Yang Xie

Anticancer Activity of Methanol Extract of Ficus carica Leaves and Fruits Against Proliferation, Apoptosis, and Necrosis in Huh7it Cells

Adita Ayu Permanasari,Dwi Winarni,Eva Agustina,Risa Purnamasari,Suhailah Hayaza,Win Darmanto

Machine Learning-Enhanced T Cell Neoepitope Discovery for Immunotherapy Design

Carlos Magalh？es,Joana Martins,Miguel Rocha,Nuno S Osório

A Holistic Evaluation of Articles on PD-1 and PD-L1 Published Between 1975 and 2017: A Bibliometric Analysis

Engin ？enel,Y？lmaz Ba？

Distinct DNA Sequence Preference for Histone Occupancy in Primary and Transformed Cells

Divyesh Patel,Manthan Patel,Subhamoy Datta,Umashankar Singh

Leveraging Image-Derived Phenotypic Measurements for Drug-Target Interaction Predictions

Adam T Szafran,Arvind Rao,Fabio Stossi,Michael A Mancini,Srikanth Kuthuru

On the Bias of Precision Estimation Under Separate Sampling

Shuilian Xie,Ulisses M Braga-Neto

Visual Analytics of Genomic and Cancer Data: A Systematic Review

Chng Wei Lau,Daniel R Catchpoole,Quang Vinh Nguyen,Yi Zhou,Zhonglin Qu

MicroRNAs in Female Malignancies

Giorgia Colombo,Stavroula Lila Kastora,Themis Liolios

Transcriptomics Signature from Next-Generation Sequencing Data Reveals New Transcriptomic Biomarkers Related to Prostate Cancer

Abedalrhman Alkhateeb,Dora Cavallo-Medved,Iman Rezaeian,Lisa A Porter,Luis Rueda,Siva Singireddy

Optimization of Dose Schedules for Chemotherapy of Early Colon Cancer Determined by High-Performance Computer Simulations

Chase Cockrell,David E Axelrod

Deregulation of a Network of mRNA and miRNA Genes Reveals That CK2 and MEK Inhibitors May Synergize to Induce Apoptosis KRAS-Active NSCLC

Arnold Stromberg,Esther P Black,Hunter Moseley,Joshua Lambert,Madeline Krentz Gober,Robert M Flight

High-Throughput Mutation Data Now Complement Transcriptomic Profiling: Advances in Molecular Pathway Activation Analysis Approach in Cancer Biology

Anton Buzdin,Elena Poddubskaya,Maxim Sorokin,Nicolas Borisov

Interchromosomal Translocations as a Means to Map Chromosome Territories in Breast Cancer

Fritz F Parl,Philip S Crooke,William D Dupont

Rewiring of the Transcription Factor Network in Acute Myeloid Leukemia

Constanze Bonifer,Peter N Cockerill,Salam A Assi

Automated Classification of Malignant and Benign Breast Cancer Lesions Using Neural Networks on Digitized Mammograms

Marghny H Mohamed,Mohamed Bamatraf,Mohammed M Abdelsamea

Pathway Interactions Based on Drug-Induced Datasets

Shinuk Kim

A Molecular and Morphological Deep-Dive Into Metaplastic Breast Cancers

Amy E McCart Reed,Sunil R Lakhani

Guest Editorial—Special Collection Topic: Statistical Systems Theory in Cancer Modeling, Diagnosis, and Therapy

Anne-Laure Boulesteix,Edward R Dougherty,Lori A Dalton,Michelle Zhang

Thyroid Nodule Management: Thyroid-Stimulating Hormone, Ultrasound, and Cytological Classification System for Predicting Malignancy

Asirvatham Alwin Robert,Mohamed Abdulaziz Al Dawish,Mohammed A Thabet,Rim Braham

Potential Breast Anticancer Drug Targets Revealed by Differential Gene Regulatory Network Analysis and Molecular Docking: Neoadjuvant Docetaxel Drug as a Case Study

Adel Aloraini,Karim M ElSawy

The MAPK-Signaling Pathway in Colorectal Cancer: Dysregulated Genes and Their Association With MicroRNAs

Jennifer S Herrick,Lila E Mullany,Lori C Sakoda,Martha L Slattery,Roger K Wolff,Wade S Samowitz

Chromatic: WebAssembly-Based Cancer Genome Viewer

Daoud Meerzaman,Richard Finney

Phenotype Classification Using Moment Features of Single-Cell Data

Chao Sima,Edward R Dougherty,Jianping Hua,Michael L Bittner,Seungchan Kim

Decomposing the Apoptosis Pathway Into Biologically Interpretable Principal Components

Kevin R Coombes,Min Wang,Steven M Kornblau

A Supervised Learning Tool for Prostate Cancer Foci Detection and Aggressiveness Identification using Multiparametric magnetic resonance imaging/magnetic resonance spectroscopy imaging

Gazi Md Daud Iqbal,Gokhan Kirlik,Hao Zhang,Jade Wong,John Papadimitrou,Michael Naslund,Nilesh Mistry,Rao Gullapalli,Steve Roys,Warren D’Souza

Computational Model for Predicting the Relationship Between Micro-RNAs and Their Target Messenger RNAs in Breast and Colon Cancers

Shinuk Kim

Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer

Brooke L Fridley,Chen Wang,Dale W Garsed,David DL Bowtell,Ellen L Goode,Julie M Cunningham,Kimberly R Kalli,Madalene Earp,Melissa C Larson,Sebastian M Armasu,Stacey J Winham,Yanina Natanzon

A Functional Spatial Analysis Platform for Discovery of Immunological Interactions Predictive of Low-Grade to High-Grade Transition of Pancreatic Intraductal Papillary Mucinous Neoplasms

Anirban Maitra,Arvind Rao,Edwin Roger Parra,Huamin Wang,Ignacio Wistuba,Jaime Rodriguez-Canales,Luisa Solis,Mei Jiang,Naohiro Uraoka,Souptik Barua,Subrata Sen

A Bayesian Gene-Based Genome-Wide Association Study Analysis of Osteosarcoma Trio Data Using a Hierarchically Structured Prior

Lin Zhang,Lisa Mirabello,Logan Spector,Saonli Basu,Yi Yang

An Introduction to the Mathematical Modeling in the Study of Cancer Systems Biology

Abdallah K Alameddine,Brian Binnall,Frederick Conlin

A Visually Interpretable, Dictionary-Based Approach to Imaging-Genomic Modeling, With Low-Grade Glioma as a Case Study

Arvind Rao,Chang Su,Harrison Bai,Srikanth Kuthuru,Tiep Vu,Vishal Monga,William Deaderick

Using Semantic Web Technologies to Enable Cancer Genomics Discovery at Petabyte Scale

Adam Stanojevic,Brandi Davis-Dusenbery,Deniz Kural,Dragan Bajcic,Dragan Djordjevic,Filip Jelic,Jelena Radenkovic,Jessica Lau,Jovan Cejovic,Milica Miletic,Milos Nesic,Nick Groves-Kirkby,Patrick Grady,Stevan Radanovic,Vladimir Mladenovic

Multiscale Tumor Modeling With Drug Pharmacokinetic and Pharmacodynamic Profile Using Stochastic Hybrid System

Wasiu Opeyemi Oduola,Xiangfang Li

Sequential Experimental Design for Optimal Structural Intervention in Gene Regulatory Networks Based on the Mean Objective Cost of Uncertainty

Edward R Dougherty,Mahdi Imani,Roozbeh Dehghannasiri,Ulisses M Braga-Neto

Bayesian Classification of Proteomics Biomarkers from Selected Reaction Monitoring Data using an Approximate Bayesian Computation-Markov Chain Monte Carlo Approach

Kashyap Nagaraja,Ulisses Braga-Neto

Cross-cancer Prediction: A Novel Machine Learning Approach to Discover Molecular Targets for Development of Treatments for Multiple Cancers

Dayong Wang,Katie Gao,Yi Huang

Corrigendum

Machine Learning With K-Means Dimensional Reduction for Predicting Survival Outcomes in Patients With Breast Cancer

Hyunkyung Kim,Kohei Hasegawa,Melissa Zhao,Yushi Tang

Significant Prognostic Features and Patterns of Somatic TP53 Mutations in Human Cancers

Andrea Edwards,Erik K Flemington,Kun Zhang,Wensheng Zhang

Therapeutic Interventions of Cancers Using Intrinsically Disordered Proteins as Drug Targets: c-Myc as Model System

Deepak Kumar,Nitin Sharma,Rajanish Giri

A Software Application for Mining and Presenting Relevant Cancer Clinical Trials per Cancer Mutation

Amanda L Blackford,Elana J Fertig,Jordan Gumm,Lisa M Gandy,Luis A Diaz, Jr

Integrative Analysis of Gene Networks and Their Application to Lung Adenocarcinoma Studies

Faming Liang,Guanghua Xiao,Ling Cai,Sangin Lee

Adaptive Multiview Nonnegative Matrix Factorization Algorithm for Integration of Multimodal Biomedical Data

Bisakha Ray,David Feny？,Wenke Liu

An Assessment of Database-Validated microRNA Target Genes in Normal Colonic Mucosa: Implications for Pathway Analysis

Jennifer S Herrick,John R Stevens,Lila E Mullany,Martha L Slattery,Roger K Wolff