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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Theory on the Dynamics of Oscillatory Loops in the Transcription Factor Networks

Rajamanickam Murugan

Pervasive variation of transcription factor orthologs contributes to regulatory network evolution

Shilpa Nadimpalli,Anton V. Persikov,Mona Singh

Phylogenetics and the human microbiome

Frederick A Matsen IV

Statistical distributions and entropy considerations in gene codes

Krystyna Lukierska-Walasek,Krzysztof Topolski,Krzysztof Trojanowski

Universality in stochastic exponential growth

Srividya Iyer-Biswas,Gavin E. Crooks,Norbert F. Scherer,Aaron R. Dinner

Universal relationship in gene-expression changes for cells in steady-growth state

Kunihiko Kaneko,Chikara Furusawa,Tetsuya Yomo

Numerical simulation of growth of Escherichia coli in unsaturated porous media

Pavel Hron,Daniel Jost,Peter Bastian,Claudia Gallert,Josef Winter,Olaf Ippisch

Rare event simulation in immune biology: Models of negative selection in T-cell maturation

Corinna Ernst,Ellen Baake

Expression proteomics reveals protein targets and highlights mechanisms of action of small molecule drugs

Alexey Chernobrovkin,Consuelo Marin Vicente,Neus Visa,Roman A. Zubarev

Stress reorganisation and response in active solids

Rhoda J. Hawkins,Tanniemola B. Liverpool

The dynamics of sperm cooperation in a competitive environment

H. S. Fisher,L. Giomi,H. E. Hoekstra,L. Mahadevan

Collective dynamics of actomyosin cortex endow cells with intrinsic mechanosensing properties

Jocelyn étienne,Jonathan Fouchard,Démosthène Mitrossilis,Nathalie Bufi,Pauline Durand-Smet,Atef Asnacios

Multiscale modeling of oscillations and spiral waves in Dictyostelium populations

Javad Noorbakhsh,David Schwab,Allyson Sgro,Thomas Gregor,Pankaj Mehta

Variation in Microbial Growth under Hypergravity

Conrad Cabral,Chintamani Pai,Kashmira Prasade,Smruti Deoghare,Urooz Kazi,Sonalia Fernandes

Capturing coevolutionary signals in repeat proteins

Rocío Espada,R. Gonzalo Parra,Thierry Mora,Aleksandra M. Walczak,Diego Ferreiro

Molecular dynamics studies on the NMR structures of rabbit prion protein wild-type and mutants: surface electrostatic charge distributions

Jiapu Zhang,Feng Wang

Variational cross-validation of slow dynamical modes in molecular kinetics

Robert T. McGibbon,Vijay S. Pande

Bayesian Structured Sparsity from Gaussian Fields

Barbara E. Engelhardt,Ryan P. Adams

Maximizing Protein Translation Rate in the Ribosome Flow Model: the Homogeneous Case

Yoram Zarai,Michael Margaliot,Tamir Tuller

SEK: Sparsity exploiting $k$-mer-based estimation of bacterial community composition

Saikat Chatterjee,David Koslicki,Siyuan Dong,Nicolas Innocenti,Lu Cheng,Yueheng Lan,Mikko Vehkaper？,Mikael Skoglund,Lars K. Rasmussen,Erik Aurell,Jukka Corander

Ab initio Prediction of RNA Nucleotide Interactions with Backbone k-Tree Model

Liang Ding,Xingran Xue,Sal LaMarca,Mohammad Mohebbi,Abdul Samad,Russell L. Malmberg,Liming Cai

Beyond clustering: Mean-field dynamics on networks with arbitrary subgraph composition

Martin Ritchie,Luc Berthouze,Istvan Z. Kiss

Axiomatic opportunities and obstacles for inferring a species tree from gene trees

Mike Steel,Joel D. Velasco

Estimation and Modelling of PCBs Bioaccumulation in the Adriatic Sea Ecosystem

Marianna Taffi,Nicola Paoletti,Pietro Liò,Luca Tesei,Sandra Pucciarelli,Mauro Marini

On the behavior of the leading eigenvalue of Eigen's evolutionary matrices

Yuri S. Semenov,Alexander S. Bratus,Artem S. Novozhilov

Geometry for a `penguin-albatross' rookery

Fabio Giavazzi,Alberto Vailati

Chemical warfare and survival strategies in bacterial range expansions

Markus F. Weber,Gabriele Poxleitner,Elke Hebisch,Erwin Frey,Madeleine Opitz

Spatial effect on stochastic dynamics of bistable evolutionary games

Kohaku H. Z. So,Hisashi Ohtsuki,Takeo Kato

The Dengue risk transmission during the FIFA 2014 World Cup

Paulo S. Lucio,Nicolas Degallier,Maria H. C. Spyrides,Cláudio M. S. e Silva,Julio C. B. da Silva,Helder J. F. da Silva,Geovane Máximo,Walter Junior,Michel Mesquita

Ecoepidemics with a nonlinear disease incidence

Ezio Venturino

The Art of War: Beyond Memory-one Strategies in Population Games

Christopher Lee,Marc Harper,Dashiell Fryer

Stopping the SuperSpreader Epidemic, Part II: MERS Goes Pandemic

W. David Wick

From Science to Management: Using Bayesian Networks to Learn about Lyngbya

Sandra Johnson,Eva Abal,Kathleen Ahern,Grant Hamilton

Deleterious passengers in adapting populations

Benjamin H Good,Michael M Desai

Algebraic moment closure for population dynamics on discrete structures

Thomas House

Optional games on cycles and complete graphs

Hyeong-Chai Jeong,Seung-Yoon Oh,Benjamin Allen,Martin A. Nowak

Ecoepidemics with infected prey in herd defense: the harmless and toxic cases

Elena Cagliero,Ezio Venturino

Behavioral criteria of feedforward processing in rapid-chase theory: Some formal considerations

Thomas Schmidt

Quasi-Critical Brain Dynamics on a Non-Equilibrium Widom Line

Rashid V. Williams-Garcia,Mark Moore,John M. Beggs,Gerardo Ortiz

Activity Modulation of Motor and Somatosensory Neurons in Learning

Alexander Conway,Fritzie Arce

Stochastic modeling of excitable dynamics: improved Langevin model for mesoscopic channel noise

Igor Goychuk

A Neuron as a Signal Processing Device

Tao Hu,Zaid J. Towfic,Cengiz Pehlevan,Alex Genkin,Dmitri B. Chklovskii

Invariant versus classical quartet inference when evolution is heterogeneous across sites and lineages

Jesús Fernández-Sánchez,Marta Casanellas

Exact computation of the Maximum Entropy Potential of spiking neural networks models

Rodrigo Cofre,Bruno Cessac

Predicting age of human subjects based on structural connectivity from diffusion tensor imaging

Cheol E. Han,Luis R. Peraza,John-Paul Taylor,Marcus Kaiser

Effect of Vision Angle on the Phase Transition in a Flocking Behavior of Animal Groups

P. The Nguyen,Sang-Hee Lee,V. Thanh Ngo

The largest strongly connected component in Wakeley et al's cyclical pedigree model

Jochen Blath,Stephan Kadow,Marcel Ortgiese

Solvable random walk model with memory and its relations with Markovian models of anomalous diffusion

D. Boyer,J. C. R. Romo-Cruz

Tractable diffusion and coalescent processes for weakly correlated loci

Paul A. Jenkins,Paul Fearnhead,Yun S. Song

Applying Quantum Principles to Psychology

Jerome R Busemeyer,Zheng Wang,Andrei Khrennikov,Irina Basieva

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