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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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CABeRNET: a Cytoscape app for Augmented Boolean models of gene Regulatory NETworks

Andrea Paroni,Alex Graudenzi,Giulio Caravagna,Chiara Damiani,Giancarlo Mauri,Marco Antoniotti

Topological phenotypes constitute a new dimension in the phenotypic space of leaf venation networks

Henrik Ronellenfitsch,Jana Lasser,Douglas C. Daly,Eleni Katifori

The Theory of Diffraction Tomography

Paul Müller,Mirjam Schürmann,Jochen Guck

Evaluating the importance of environmental factors on the spatial distribution of livestock settlements in the Monte desert with a Monte Carlo based model: Settlement Dynamics in Drylands (SeDD)

Emmanuel N. Millán,Silvana Goirán,Julieta N. Aranibar,Leonardo Forconesi,Carlos García Garino,Eduardo M. Bringa

Analytical properties of a three-compartmental dynamical demographic model

E. B. Postnikov

Levy model of cancer

Augusto Gonzalez

Approximated Newton Algorithm for the Ising Model Inference Speeds Up Convergence, Performs Optimally and Avoids Over-fitting

Ulisse Ferrari

Greedy adaptive walks on a correlated fitness landscape

Su-Chan Park,Johannes Neidhart,Joachim Krug

Loops and autonomy promote evolvability of ecosystem networks

Jianxi Luo

Memetic evolution of art to distinct aesthetics

Francis AM Manno III

An analysis of the vectorial capacity using moment-generating functions

Daniel A. M. Villela

Informations in models of evolutionary dynamics

Olivier Rivoire

Time-causal and time-recursive spatio-temporal receptive fields

Tony Lindeberg

First passage times in integrate-and-fire neurons with stochastic thresholds

Wilhelm Braun,Paul C. Matthews,Rüdiger Thul

Entrainment in up and down states of neural populations: non-smooth and stochastic models

Zachary McCleney,Zachary P. Kilpatrick

Regularity structures and renormalisation of FitzHugh-Nagumo SPDEs in three space dimensions

Nils Berglund,Christian Kuehn

A versatile clearing agent for multi-modal brain imaging

Irene Costantini,Jean-Pierre Ghobril,Antonino Paolo Di Giovanna,Anna Letizia Allegra Mascaro,Ludovico Silvestri,Marie Caroline Müllenbroich,Leonardo Onofri,Valerio Conti,Francesco Vanzi,Leonardo Sacconi,Renzo Guerrini,Henry Markram,Giulio Iannello,Francesco Saverio Pavone

Bio-inspired Unsupervised Learning of Visual Features Leads to Robust Invariant Object Recognition

Saeed Reza Kheradpisheh,Mohammad Ganjtabesh,Timothée Masquelier

Phase-of-firing code

Anna Cattani,Gaute T. Einevoll,Stefano Panzeri

Thermodynamics of accuracy in kinetic proofreading: Dissipation and efficiency trade-offs

Riccardo Rao,Luca Peliti

Optimizing experimental parameters for tracking of diffusing particles

Christian L. Vestergaard

Phase-separation transitions in asymmetric lipid bilayers

Shunsuke F. Shimobayashi,Masatoshi Ichikawa,Takashi Taniguchi

Adaptive Randomized Dimension Reduction on Massive Data

Gregory Darnell,Stoyan Georgiev,Sayan Mukherjee,Barbara E Engelhardt

Spread of pathogens in the patient transfer network of US hospitals

Juan Fernández Gracia,Jukka-Pekka Onnela,Michael L. Barnett,Víctor M. Eguíluz,Nicholas A. Christakis

Evaluating the Performance of BSBL Methodology for EEG Source Localization On a Realistic Head Model

Sajib Saha,Rajib Rana,Ya. I. Nesterets,M. Tahtali,Frank de Hoog,T. E. Gureyev

Universal Protein Distributions in a Model of Cell Growth and Division

Naama Brenner,C. M. Newman,Dino Osmanovic,Yitzhak Rabin,Hanna Salman,D. L. Stein

Phase transition in p53 states induced by glucose

Md. Jahoor Alam,R. K. Brojen Singh

Novel Advancements in Three-Dimensional Neural Tissue Engineering and Regenerative Medicine

Richard J. McMurtrey

Osmotic stress affects functional properties of human melanoma cell lines

Caterina A. M. La Porta,Anna Ghilardi,Maria Pasini,Lasse Laurson,Mikko J. Alava,Stefano Zapperi,Martine Ben Amar

Structural Changes of Active Skeletal Muscles: Modelling, Validation and Numerical Experiments

Hadi Rahemi,Nilima Nigam,James M. Wakeling

Thermodynamics of Error Correction

Pablo Sartori,Simone Pigolotti

A Bayesian approach for structure learning in oscillating regulatory networks

D Trejo,AJ Millar,G Sanguinetti

Interplay of receptor memory and ligand rebinding

Thorsten Prüstel,Martin Meier-Schellersheim

Stochastic focusing coupled with negative feedback enables robust regulation in biochemical reaction networks

Andreas Milias-Argeitis,Stefan Engblom,Pavol Bauer,Mustafa Khammash

Type-dependent stochastic Ising model describing the dynamics of a non-symmetric feedback module

Manuel González-Navarrete

Predicting genetic interactions from Boolean models of biological networks

Laurence Calzone,Emmanuel Barillot,Andrei Zinovyev

Kinetics of self-assembly via facilitated diffusion: formation of the transcription complex

Ziya Kalay

Computational modeling to elucidate molecular mechanisms of epigenetic memory

Jianhua Xing,Jin Yu,Hang Zhang,Xiao-Jun Tian

Trade-offs in delayed information transmission in biochemical networks

Francesca Mancini,Matteo Marsili,Aleksandra M. Walczak

Atomic Scale Design and Three-Dimensional Simulation of Ionic Diffusive Nanofluidic Channels

Jin Kyoung Park,Kelin Xia,Guo-Wei We

Model of protein fragments and statistical potentials

S. V. Kozyrev

From Animaculum to single-molecules: 300 years of the light microscope

Adam J. M. Wollman,Richard Nudd,Erik G. Hedlund,Mark C. Leake

Electron Spin Relaxations in Biological [2Fe-2S] Cluster System

Amgalanbaatar Baldansuren

Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations

Francesco Di Palma,Sandro Bottaro,Giovanni Bussi

Introducing Improved Structural Properties and Salt Dependence into a Coarse-Grained Model of DNA

Benedict E. K. Snodin,Ferdinando Randisi,Majid Mosayebi,Petr Sulc,John S. Schreck,Flavio Romano,Thomas E. Ouldridge,Roman Tsukanov,Eyal Nir,Ard A. Louis,Jonathan P. K. Doye

Accurate Evaluation of Charge Asymmetry in Aqueous Solvation

Abhishek Mukhopadhyay,Igor S. Tolokh,Alexey V. Onufriev

PrAGMATiC: a Probabilistic and Generative Model of Areas Tiling the Cortex

Alexander G. Huth,Thomas L. Griffiths,Frederic E. Theunissen,Jack L. Gallant

A sparse reformulation of the Green's function formalism allows efficient simulations of partial differential equations on tree graphs

Willem A. M. Wybo,Daniele Boccalini,Benjamin Torben-Nielsen,Marc-Oliver Gewaltig

Efficient maximum likelihood parameterization of continuous-time Markov processes

Robert T. McGibbon,Vijay S. Pande

Detecting genomic signatures of natural selection with principal component analysis: application to the 1000 Genomes data

Nicolas Duforet-Frebourg,Keurcien Luu,Guillaume Laval,Eric Bazin,Michael G. B. Blum

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