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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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RNA-based Phylogenetic Methods: Application to Mammalian Mitochondrial RNA Sequences

Cendrine Hudelot,Vivek Gowri-Shankar,Howsun Jow,Magnus Rattray,Paul G. Higgs

Introduction to new demographic model for humans

Byung Mook Weon

A Generalized Epidemic Process and Tricritical Dynamic Percolation

Hans-Karl Janssen,Martin Mueller,Olaf Stenull

Mutual information for examining correlations in DNA

Matthew J. Berryman,Andrew Allison,Derek Abbott

Field theoretic study of bilayer membrane fusion: I. Hemifusion mechanism

Kirill Katsov,Marcus Mueller,Michael Schick

Control of spiral waves and turbulent states in a cardiac model by travelling-wave perturbations

Peng-Ye Wang,Ping Xie,Hua-Wei Yin

Aging Concept in Population Dynamics

Kazumi Suematsu

Evolutionary model with genetics, aging and knowledge

Armando Ticona Bustillos,Paulo Murilo C. de Oliveira

Extinction dynamics of Lotka-Volterra ecosystems on evolving networks

Francois Coppex,Michel Droz,Adam Lipowski

Results and Limitations of the Soliton Theory of DNA Transcription

G. Gaeta

Thermodynamics of alpha- and beta-structure formation in proteins

Anders Irb？ck,Bj？rn Samuelsson,Fredrik Sjunnesson,Stefan Wallin

Mechanism of unidirectional movement of kinesin motors

Ping Xie,Shuo-Xing Dou,Peng-Ye Wang

Modeling DNA Conformational Transformations on the Mesoscopic Scales

S. N. Volkov

Random Walks for Spike-Timing Dependent Plasticity

Alan Williams,Todd K. Leen,Patrick D. Roberts

Symmetry considerations and development of pinwheels in visual maps

Ha Youn Lee,Mehdi Yahyanejad,Mehran Kardar

Structured psychosocial stress and the US obesity epidemic

Rodrick Wallace,Deborah N. Wallace

The cognitive homunculus: do tunable languages-of-thought convey adaptive advantage?

Rodrick Wallace

Two-state folding over a weak free-energy barrier

Giorgio Favrin,Anders Irb？ck,Bj？rn Samuelsson,Stefan Wallin

Discrete molecular dynamics simulations of peptide aggregation

S. Peng,F. Ding,B. Urbanc,S. V. Buldyrev,L. Cruz,H. E. Stanley,N. V. Dokholyan

A model for processivity of molecular motors

Ping Xie,Shuo-Xing Dou,Peng-Ye Wang

Brownian Dynamics Simulation of Nucleosome Formation and Disruption under Stretching

Wei Li,Shuo-Xing Dou,Peng-Ye Wang

Specific protein-protein binding in many-component mixtures of proteins

Richard P. Sear

Coupled folding-binding versus docking: A lattice model study

Nitin Gupta,Anders Irb？ck

Folding thermodynamics of three beta-sheet peptides: A model study

Anders Irb？ck,Fredrik Sjunnesson

Sequence-based study of two related proteins with different folding behaviors

Giorgio Favrin,Anders Irb？ck,Stefan Wallin

A Computational Algebra Approach to the Reverse Engineering of Gene Regulatory Networks

Reinhard Laubenbacher,Brandilyn Stigler

Stabilization of microtubules due to microtubule-associated proteins: A simple model

Bindu S. Govindan,William B. Spillman, Jr.

Topological Generalizations of network motifs

N. Kashtan,S. Itzkovitz,R. Milo,U. Alon

The stochastic behavior of a molecular switching circuit with feedback

Supriya Krishnamurthy,Eric Smith,David Krakauer,Walter Fontana

Failed "nonaccelerating" models of prokaryote gene regulatory networks

M. J. Gagen,J. S. Mattick

Fast Computation with Neural Oscillators

Wei Wang,Jean-Jacques E. Slotine

K-Winners-Take-All Computation with Neural Oscillators

Wei Wang,Jean-Jacques E. Slotine

Diffusion Entropy Approach to Dynamical Characteristics of a Hodgkin-Huxley Neuron

Huijie Yang,Fangcui Zhao,Zhongnan Li,Wei Zhang

Noise-driven transition to quasi-deterministic limit cycle dynamics in excitable systems

Cyrill B. Muratov,Eric Vanden-Eijnden,Weinan E

Dynamic receptor team formation can explain the high signal transduction gain in E. coli

Reka Albert,Yu-wen Chiu,Hans G. Othmer

On the uniform generation of random graphs with prescribed degree sequences

R. Milo,N. Kashtan,S. Itzkovitz,M. E. J. Newman,U. Alon

Evolution of the Protein Interaction Network of Budding Yeast: Role of the Protein Family Compatibility Constraint

K. -I. Goh,B. Kahng,D. Kim

Effect of leader's strategy on opinion formation in networked societies

Pawel Sobkowicz

Cellular automaton for bacterial towers

J. O. Indekeu,C. V. Giuraniuc

Determinative degree and nucleotide sequence analysis by trianders

Diana Duplij,Steven Duplij

Computer simulations of history of life: speciation, emergence of complex species from simpler organisms, and extinctions

Debashish Chowdhury,Dietrich Stauffer

Is prokaryotic complexity limited by accelerated growth in regulatory overhead?

Larry J. Croft,Martin J. Lercher,Michael J. Gagen,John S. Mattick

An asymptotic maximum principle for essentially linear evolution models

E. Baake,M. Baake,A. Bovier,M. Klein

Computational Consequences of Neglected First-Order van der Waals Forces

Kevin Cahill,V. Adrian Parsegian

Twist-bend instability for toroidal DNA condensates

Igor M. Kulic,Denis Andrienko,Markus Deserno

Correlation between sequence hydrophobicity and surface-exposure pattern of database proteins

Susanne Moelbert,Eldon Emberly,Chao Tang

Shape Selection in Chiral Self-Assembly

Robin L. B. Selinger,Jonathan V. Selinger,Anthony P. Malanoski,Joel M. Schnur

Thermal effects in stretching of Go-like models of titin and secondary structures

Marek Cieplak,Trinh Xuan Hoang,Mark O. Robbins

A macroscopic scale model of bacterial flagellar bundling

MunJu Kim,James C. Bird,Annemarie J. Van Parys,Kenneth S. Breuer,Thomas R. Powers

Dynamic supercoiling bifurcations of growing elastic filaments

Charles W. Wolgemuth,Raymond E. Goldstein,Thomas R. Powers

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