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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Model evaluation for glycolytic oscillations in yeast biotransformations of xenobiotics

Lutz Brusch,Gianaurelio Cuniberti,Martin Bertau

Bifurcation analysis of a model of the budding yeast cell cycle

Dorjsuren Battogtokh,John J. Tyson

Hypothesis: Is percolative clustering an emerging paradigm in protein-protein interactions ?

RV Krishnan

On "Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates": Does a large number of tests obviate confidence intervals of the FDR?

David R. Bickel

Fluctuations and noise in cancer development

Matthew J. Berryman,Sabrina L. Spencer,Andrew Allison,Derek Abbott

Probabilities of spurious connections in gene networks: Application to expression time series

David R. Bickel

Modeling Interactome: Scale-Free or Geometric?

Natasa Przulj,Derek G. Corneil,Igor Jurisica

Metabolic Rate Calibrates the Molecular Clock: Reconciling Molecular and Fossil Estimates of Evolutionary Divergence

James F. Gillooly,Andrew P. Allen,Geoffrey B. West,James H. Brown

Modulation of Base Specific Mutation and Recombination Rates Enables Functional Adaptation within the Context of the Genetic Code

Taison Tan,Leonard D. Bogarad,Michael W. Deem

Green's Function Reaction Dynamics: a new approach to simulate biochemical networks at the particle level and in time and space

Jeroen S. van Zon,Pieter Rein ten Wolde

Comparison of tRNA and rRNA Phylogenies in Proteobacteria: Implications for the Frequency of Horizontal Gene Transfer

Bin Tang,Philippe Boisvert,Paul G. Higgs

Ultimate limit to human longevity

Byung Mook Weon

Reinforcing the Resilience of Complex Networks

Luciano da Fontoura Costa

Correlated and Decorrelated Positional and Orientational Order in the Nucleosomal Core Particle Mesophases

V. Lorman,R. Podgornik,B. ？ek？

Complex cooperativity of ATP hydrolysis in the F1-ATPase molecular motor

Ming S. Liu,B. D. Todd,Richard J. Sadus

Helix-coil Transition in Closed Circular DNA

V. F. Morozov,Shura Hayryan,E. Sh. Mamasakhlisov,A. V. Grigoryan,A. V. Badasyan,Chin-Kun Hu

Cooperativity and Contact Order in Protein Folding

Marek Cieplak

Speed-Up of DNA Melting Algorithm with Complete Nearest Neighbor Properties

E. Tostesen,F. Liu,T. -K. Jenssen,E. Hovig

Novel steady state of a microtubule assembly in a confined geometry

Bindu S. Govindan,William. B. Spillman, Jr.

Stability and the Evolvability of Function in a Model Protein

Jesse D Bloom,Claus O Wilke,Frances H Arnold,Christoph Adami

Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness

Maximilian Schlosshauer,David Baker

Temperature Dependent Conformational Transitions and Hydrogen Bond Dynamics of the Elastin-Like Octapeptide GVG(VPGVG): a Molecular Dynamics Study

Roger Rousseau,Eduard Schreiner,Axel Kohlmeyer,Dominik Marx

Spectra and waiting-time densities in firing resonant and nonresonant neurons

T. Verechtchaguina,L. Schimansky-Geier,I. M. Sokolov

Mathematical model of solid tumor formation

R. G. Khlebopros,V. A. Slepkov,V. G. Sukhovolsky,Y. V. Mironov,V. E. Fedorov,S. P. Gabuda

Mechanisms of pattern formation during T cell adhesion

Thomas R. Weikl,Reinhard Lipowsky

Deleting species from model food webs

Christopher Quince,Paul Higgs,Alan McKane

Regulation of Neuromodulator Receptor Efficacy - Implications for Whole-Neuron and Synaptic Plasticity

Gabriele Scheler

A Selective Advantage for Conservative Viruses

Yisroel Brumer,Eugene I. Shakhnovich

Host-Parasite Co-evolution and Optimal Mutation Rates for Semi-conservative Quasispecies

Yisroel Brumer,Eugene I. Shakhnovich

The impact of non-linear functional responses on the long-term evolution of food web structure

Barbara Drossel,Alan McKane,Christopher Quince

The Waterwheel in the Waterfall

D. Balciunas

Cluster approximations for probabilistic systems: a new perspective of epidemiological modelling

Thomas Petermann,Paolo De Los Rios

Searching low-energy conformations of two elastin sequences

H. Arkin

Stacking and Hydrogen Bonding. DNA Cooperativity at Melting

Vladimir F. Morozov,Artem V. Badasyan,Arsen V. Grigoryan,Mihran A. Sahakyan,Evgeni Sh. Mamasakhlisov

Importance of chirality and reduced flexibility of protein side chains: A study with square and tetrahedral lattice models

Jinfeng Zhang,Yu Chen,Rong Chen,Jie Liang

Scale-Free topologies and Activatory-Inhibitory interactions

Jesus Gomez-Gardenes,Yamir Moreno,Luis Mario Floria

Protein Structure and Evolutionary History Determine Sequence Space Topology

Boris Shakhnovich,Eric Deeds,Charles Delisi,Eugene Shakhnovich

Lever-arm and Washboard-potential theories jointly account for Myosin II dynamics

A. Buonocore,L. Caputo,E. Pirozzi,L. M. Ricciardi

Information Processing in Brain Microtubules

Jean Faber,Renato Portugal,Luiz Pinguelli Rosa

Mathematical Analysis and Simulations of the Neural Circuit for Locomotion in Lamprey

Li Zhaoping,Alex Lewis,Silvia Scarpetta

Towards comparative theoretical neuroanatomy of the cerebral cortex

Jan Karbowski

Pulse-coupled resonate-and-fire models

Keiji Miura,Masato Okada

Effects of Noise in a Cortical Neural Model

Maria Marinaro,Silvia Scarpetta

Statistical analysis of Gene and Intergenic DNA Sequences

D. Kugiumtzis,A. Provata

Pair approximation of the stochastic susceptible-infected-recovered-susceptible epidemic model on the hypercubic lattice

Jaewook Joo,Joel L. Lebowitz

On the effect of fluctuating recombination rates on the decorrelation of gene histories in the human genome

A. Eriksson,B. Mehlig

Stochastic evolution and multifractal classification of prokaryotes

Matthew J. Berryman,Andrew Allison,Derek Abbott

Site Model of Allometric Scaling and Fractal Distribution Networks of Organs

Walton R. Gutierrez

Dynamics of Acute Inflammation

Rukmini Kumar,Gilles Clermont,Yoram Vodovotz,Carson Chow

Rupture of a liposomal vesicle

Marco A. Idiart,Yan Levin

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