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OALib Journal期刊
ISSN: 2333-9721
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Quantitative Biology
ISSN Print:
ISSN Online:
主页:
http://arxiv.org/archive/q-bio
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Multiple, weak hits confuse complex systems: A transcriptional regulatory network as an example
Vilmos Agoston
,
Peter Csermely
,
Sandor Pongor
On The Reconstruction of Interaction Networks with Applications to Transcriptional Regulation
Adam A. Margolin
,
Ilya Nemenman
,
Chris Wiggins
,
Gustavo Stolovitzky
,
Andrea Califano
Phase Transition in Reconstituted Chromatin
Tonau Nakai
,
Kohji Hizume
,
Shige. H. Yoshimura
,
Kunio Takeyasu
,
Kenichi Yoshikawa
Two-Channel Totally Asymmetric Simple Exclusion Processes
Ekaterina Pronina
,
Anatoly B. Kolomeisky
Molecular Dynamics Simulations of a Nucleosome and Free DNA
Thomas C. Bishop
Unified perspective on proteins: A physics approach
Jayanth R. Banavar
,
Trinh Xuan Hoang
,
Amos Maritan
,
Flavio Seno
,
Antonio Trovato
Oligomerization of amyloid Abeta peptides using hydrogen bonds and hydrophobicity forces
Giorgio Favrin
,
Anders Irb?ck
,
Sandipan Mohanty
Thermodynamic Prediction of Protein Neutrality
Jesse D. Bloom
,
Jonathan J. Silberg
,
Claus O. Wilke
,
D. Allan Drummond
,
Christoph Adami
,
Frances H. Arnold
Latent periodicity of serine-threonine and tyrosine protein kinases and another protein families
Andrew A. Laskin
,
Nikolai A. Kudryashov
,
Konstantin G. Skryabin
,
Eugene V. Korotkov
An Alternative Model of Amino Acid Replacement
Gavin E. Crooks
,
Steven E. Brenner
Potential function of simplified protein models for discriminating native proteins from decoys: Combining contact interaction and local sequence-dependent geometry
Jinfeng Zhang
,
Rong Chen
,
Jie Liang
The Effects of Stacking on the Configurations and Elasticity of Single Stranded Nucleic Acids
A. Buhot
,
A. Halperin
Linear response of a grafted semiflexible polymer to a uniform force field
Panayotis Benetatos
,
Erwin Frey
Effects of receptor clustering on ligand dissociation: Theory and simulations
Manoj Gopalakrishnan
,
Kimberly Forsten-Williams
,
Matthew A. Nugent
,
Uwe C. Tauber
Dynamics and coding of a biologically-motivated network
Carlos Aguirre
,
Joao Martins
,
R. Vilela Mendes
Developing optimal nonlinear scoring function for protein design
Changyu Hu
,
Xiang Li
,
Jie Liang
Generalized Poland-Scheraga model for supercoiled DNA
Thomas Garel
,
Henri Orland
,
Edouard Yeramian
Predicting spike times of a detailed conductance-based neuron model driven by stochastic spike arrival
Renaud Jolivet
,
Wulfram Gerstner
Self consistent proteomic field theory of stochastic gene switches
Aleksandra M. Walczak
,
Masaki Sasai
,
Peter G. Wolynes
Biological Profiling of Gene Groups utilizing Gene Ontology
Nils Blüthgen
,
Karsten Brand
,
Branka ?ajavec
,
Maciej Swat
,
Hanspeter Herzel
,
Dieter Beule
Single Cancer Cell Detection by Near Infrared Microspectroscopy, Infrared Chemical Imaging and Fluorescence Microspectroscopy
I. C. Baianu
,
D. Costescu
,
N. E. Hofmann
,
S. S. Korban
Universal behavior in a generalized model of contagion
P. S. Dodds
,
D. J. Watts
A Biological Coevolution Model with Correlated Individual-Based Dynamics
Volkan Sevim
,
Per Arne Rikvold
The dauer mutation of the caenorhabditis elegans, simulated with the Penna and the Stauffer model
Kerstin Colonius
On the stability of Murray's testosterone model
G. A. Enciso
,
E. D. Sontag
Complementarity between survival and mortality
Byung Mook Weon
Solvable senescence model with positive mutations
J. B. Coe
,
Y. Mao
,
M. E. Cates
Global optimization of proteins using a dynamical lattice model: Ground states and energy landscapes
F. Dressel
,
S. Kobe
Neurokinematic Modeling of Complex Swimming Patterns of the Larval Zebrafish
Scott A. Hill
,
Xiao-Ping Liu
,
Melissa A. Borla
,
Jorge V. Jose
,
Donald M. O'Malley
A subjective distance between stimuli: quantifying the metric structure of representations
D. Oliva
,
I. Samengo
,
S. Leutgeb
,
S. Mizumori
Probabilistic pathway representation of cognitive information
Andrei Khrennikov
The architecture of the protein domain universe
Nikolay V. Dokholyan
MultiNeuron - Neural Networks Simulator For Medical, Physiological, and Psychological Applications
A. N. Gorban
,
D. A. Rossiyev
,
M. G. Dorrer
Of sequence and structure: Strategies of protein thermostability in evolutionary perspective
Igor N. Berezovsky
,
Eugene I. Shakhnovich
Signal processing of acoustic signals in the time domain with an active nonlinear nonlocal cochlear model
M. Drew LaMar
,
J. Xin
,
Y. Qi
Dependence of RNA secondary structure on the energy model
Bernd Burghardt
,
Alexander K. Hartmann
Predicting Genetic Regulatory Response Using Classification
Manuel Middendorf
,
Anshul Kundaje
,
Chris Wiggins
,
Yoav Freund
,
Christina Leslie
Chemical models of genetic toggle switches
Patrick B. Warren
,
Pieter Rein ten Wolde
Scale-rich metabolic networks: background and introduction
Reiko Tanaka
,
John Doyle
High-dimensional switches and the modeling of cellular differentiation
Olivier Cinquin
,
Jacques Demongeot
The Shift-Match Number and String Matching Probabilities for Binary Sequences
A. H. Bilge
,
A. Erzan
,
D. Balcan
A modular Fibonacci sequence in proteins
M. Dominy
,
G. Rosen
Relevant distance between two different instances of the same potential energy in protein folding
Jose Luis Alonso
,
Pablo Echenique
Water and molecular chaperones act as weak links of protein folding networks: energy landscape and punctuated equilibrium changes point towards a game theory of proteins
Istvan A. Kovacs
,
Mate S. Szalay
,
Peter Csermely
Replica exchange molecular dynamics simulations of amyloid peptide aggregation
M. Cecchini
,
F. Rao
,
M. Seeber
,
A. Caflisch
A model for the accidental catalysis of protein unfolding in vivo
Richard P. Sear
Three Bead Rotating Chain model shows universality in the stretching of proteins
Hamed Seyed-allaei
FSSP to SCOP and CATH (F2CS) Prediction Server
Gad Getz
,
Alina Starovolsky
,
Eytan Domany
Distribution Functions, Loop Formation Probabilities and Force-Extension Relations in a Model for Short Double-Stranded DNA Molecules
P. Ranjith
,
P. B. Sunil Kumar
,
Gautam I. Menon
Hidden symmetries in primary sequences of small alpha proteins
Ruizhen Xu
,
Yanzhao Huang
,
Mingfen Li
,
Hanlin Chen
,
Yi Xiao
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