Quantitative Biology - oalib

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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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A Multiscale Analysis of Traveling Waves in Stochastic Neural Fields

Eva Lang

Beta Distribution of Human MTL Neuron Sparsity: A Sparse and Skewed Code

Andrew Magyar

Deep Networks Resemble Human Feed-forward Vision in Invariant Object Recognition

Saeed Reza Kheradpisheh,Masoud Ghodrati,Mohammad Ganjtabesh,Timothée Masquelier

A symmetry-based method to infer structural brain networks from tractography data

Kamal Shadi,Saideh Bakhshi,David A. Gutman,Helen S. Mayberg,Constantine Dovrolis

Comparison of different moment-closure approximations for stochastic chemical kinetics

David Schnoerr,Guido Sanguinetti,Ramon Grima

Scalable Bayesian Kernel Models with Variable Selection

Lorin Crawford,Kris C. Wood,Sayan Mukherjee

Group Size Effect on the Success of Wolves Hunting

Ramon Escobedo,Denys Dutykh,Cristina Muro,Lee Spector,Raymond Coppinger

Bursting noise in gene expression dynamics: Linking microscopic and mesoscopic models

Yen Ting Lin,Tobias Galla

Transition to chaos in random neuronal networks

Jonathan Kadmon,Haim Sompolinsky

Geometry of Spatial Memory Replay

Yuri Dabaghian

Generic Criticality in Ecological and Neuronal Networks

David A. Kessler,Herbert Levine

Stability and Localization of inter-individual differences in functional connectivity

Raag D. Airan,Joshua T. Vogelstein,Jay J. Pillai,Brian Caffo,James J. Pekar,Haris I. Sair

Fast {\large\it Cl-}type inhibitory neuron with delayed feedback has non-markov output statistics

Alexander K. Vidybida

Quantum Cognition: The possibility of processing with nuclear spins in the brain

Matthew P. A. Fisher

On Contextuality in Behavioral Data

Ehtibar N. Dzhafarov,Janne V. Kujala,Victor H. Cervantes,Ru Zhang,Matt Jones

Memetics and Neural Models of Conspiracy Theories

W？odzis？aw Duch

Limiting the spread of disease through altered migration patterns

R. McVinish,P. K. Pollett,A. Shausan

Simplified models of pacemaker spiking in raphe and locus coeruleus neurons

Henry C. Tuckwell,Ying Zhou,Nicholas J. Penington

A new strain energy function for modelling ligaments and tendons whose fascicles have a helical arrangement of fibrils

Tom Shearer

Unit Testing, Model Validation, and Biological Simulation

Gopal P. Sarma,Travis W. Jacobs,Mark D. Watts,Vahid Ghayoomi,Richard C. Gerkin,Stephen D. Larson

State-space models' dirty little secrets: even simple linear Gaussian models can have estimation problems

Marie Auger-Méthé,Chris Field,Christoffer M. Albertsen,Andrew E. Derocher,Mark A. Lewis,Ian D. Jonsen,Joanna Mills Flemming

Modeling, Simulating, and Parameter Fitting of Biochemical Kinetic Experiments

D. Goulet

Information transfer through a signaling module with feedback: a perturbative approach

Gerardo Aquino,Martin Zapotocky

Evolutionary interplay between structure, energy and epistasis in the coat protein of the $φχ174$ phage family

Rodrigo A. F. Redondo,Harold P. de Vladar,Tomasz W？odarski,Jonathan P. Bollback

Asymptotic Green's function for the stochastic reproduction of competing variants via Fisher's angular transformation

Bhavin S. Khatri

Balls, cups, and quasi-potentials: quantifying stability in stochastic systems

Ben C. Nolting,Karen C. Abbott

Convergence of random walks to Brownian motion in phylogenetic tree-space

Tom M. W. Nye

Competition of residents and invaders in a variable environment: Response to enemies and dangerous noise

Ivo Siekmann,Horst Malchow

There are no caterpillars in a wicked forest

James H. Degnan,John A. Rhodes

Magnetic fields facilitate DNA-mediated charge transport

Jiun Ru Wong,Kee Jin Lee,Jian-Jun Shu,Fangwei Shao

Origins of Bipedalism

Kwang Hyun Ko

Neuronal coupling by endogenous electric fields: Cable theory and applications to coincidence detector neurons in the auditory brainstem

Joshua H. Goldwyn,John Rinzel

Grand-canonical simulation of DNA condensation with two salts, affect of divalent counterion size

Toan T. Nguyen

Vaccine escape in 2013-4 and the hydropathic evolution of glycoproteins of A/H3N2 viruses

J. C. Phillips

Mapping intra-protein communication with local search on protein residue networks

Susan Khor

Collective Properties of a Transcription Initiation Model under Varying Environment

Yucheng Hu,John Lowengrub

OPUS-Beta: A Statistical Potential for Beta-Sheet Contact Pattern in Proteins

Linglin Yu,Mingyang Lu,Tianwu Zang,Jianpeng Ma

Ion assisted structural collapse of a single stranded DNA: a molecular dynamics approach

Soumadwip Ghosh,Himanshu Dixit,Rajarshi Chakrabarti

Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis

David Ellison,Andrew Mugler,Matthew Brennan,Sung Hoon Lee,Robert Huebner,Eliah Shamir,Laura A. Woo,Joseph Kim,Patrick Amar,Ilya Nemenman,Andrew J. Ewald,Andre Levchenko

Active Tension Network model of epithelial mechanics

Nicholas Noll,Madhav Mani,Idse Heemskerk,Sebastian Streichan,Boris I. Shraiman

Noise expands the response range of the Bacillus subtilis competence circuit

Andrew Mugler,Mark Kittisopikul,Luke Hayden,Jintao Liu,Chris H. Wiggins,Gurol M. Suel,Aleksandra M. Walczak

Real-time shape approximation and 5-D fingerprinting of single proteins

Erik C. Yusko,Brandon R. Bruhn,Olivia Eggenberger,Jared Houghtaling,Ryan C. Rollings,Nathan C. Walsh,Santoshi Nandivada,Mariya Pindrus,Adam R. Hall,David Sept,Jiali Li,Devendra S. Kalonia,Michael Mayer

Effective diffusion rates and cross-correlation analysis of "acid growth" data

Mariusz Pietruszka,Aleksandra Haduch-Sendecka

A hydrodynamic limit for chemotaxis in a given heterogeneous environment

Stefan Grosskinsky,Daniel Marahrens,Angela Stevens

Nucleosome positioning: resources and tools online

Vladimir B. Teif

Algebraic statistics of Poincaré recurrences in DNA molecule

Alexey K. Mazur,D. L. Shepelyansky

Translocation frequency of double-stranded DNA through a solid-state nanopore

Nicholas A. W. Bell,Murugappan Muthukumar,Ulrich F. Keyser

Thermodynamics of site-specific small molecular ion interactions with DNA duplex: a molecular dynamics study

Soumadwip Ghosh,Mayank Kumar Dixit,Rajarshi Chakrabarti

RNA thermodynamic structural entropy

Juan Antonio Garcia-Martin,Peter Clote

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