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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Assembly Models for Papovaviridae based on Tiling Theory

T. Keef,A. Taormina,R. Twarock

Excluded-Volume Effects in Tethered-Particle Experiments: Bead Size Matters

Darren E. Segall,Phillip C. Nelson,Rob Phillips

Exploring the energy landscape of model proteins: a metric criterion for the determination of dynamical connectivity

Lorenzo Bongini,Roberto Livi,Antonio Politi,Alessandro Torcini

Synchronization and spindle oscillation in noisy integrate-and-fire-or-burst neurons with inhibitory coupling

H. Sakaguchi,S. Tobiishi

L-selectin mediated leukocyte tethering in shear flow is controlled by multiple contacts and cytoskeletal anchorage facilitating fast rebinding events

Ulrich S. Schwarz,Ronen Alon

A methodology for determining amino-acid substitution matrices from set covers

A. H. L. Porto,V. C. Barbosa

Modeling multi-cellular systems using sub-cellular elements

T. J. Newman

paper withdrawn

Others

Electronic Transport in DNA

Daphne Klotsa,Rudolf A. Roemer,Matthew S. Turner

Mimivirus Relatives in the Sargasso Sea

Elodie Ghedin,Jean-Michel Claverie

Evolutionary origin of power-laws in Biochemical Reaction Network; embedding abundance distribution into topology

Chikara Furusawa,Kunihiko Kaneko

Self-organization of gene regulatory network motifs enriched with short transcript's half-life transcription factors

Edwin Wang,Enrico Purisima

tRNA-alike in Nanoarchaeum equitans ?

Bibekanand Mallick,Jayprokas Chakrabarti,Zhumur Ghosh,Smarajit Das,Satyabrata Sahoo

PCA and K-Means decipher genome

A. N. Gorban,A. Y. Zinovyev

Pacman percolation: a model for enzyme gel degradation

T. Abete,A. de Candia,D. Lairez,A. Coniglio

Solution of the Quasispecies Model for an Arbitrary Gene Network

Emmanuel Tannenbaum,Eugene I. Shakhnovich

To a Problem of Not Increasing Dynamic Compliance at Asthma Patients with Ventilating Disorders after Berotec Inhalation

Konstantin F. Tetenev

Probing molecular free energy landscapes by periodic loading

Oliver Braun,Andreas Hanke,Udo Seifert

Can contact potentials reliably predict stability of proteins?

Jainab Kahtun,Sagar D. Khare,Nikolay V. Dokholyan

Generalized Poland-Scheraga model for DNA hybridization

Thomas Garel,Henri Orland

Collective Dynamics of Lipid Membranes studied by Inelastic Neutron Scattering

M. C. Rheinst？dter,C. Ollinger,F. Demmel,G. Fragneto,T. Salditt

Getting DNA twist rigidity from single molecule experiments

Sebastien Neukirch

The role of mutation rate in a simple colonization model

R. Huerta-Quintanilla,M. Rodriguez-Achach

Topological structure and interaction strengths in model food webs

Christopher Quince,Paul Higgs,Alan McKane

General functions for human survival and mortality

Byung Mook Weon

Functional Bias and Spatial Organization of Genes in Mutational Hot and Cold Regions in the Human Genome

Jeffrey H. Chuang,Hao Li

Microelectromagnets for the manipulation of biological systems

H. Lee,A. M. Purdon,R. M. Westervelt

Simulations of assortative matching: complexity of cooperation emergence process

Pawel Sobkowicz

The spread of disease with birth and death on networks

Jingzhou Liu

The Speed of Adaptation in Large Asexual Populations

Claus O. Wilke

Analysis of trends in human longevity by new model

Byung Mook Weon

Entanglement Invariants and Phylogenetic Branching

J. G. Sumner,P. D. Jarvis

Dynamics of heterodimeric kinesins and cooperation of kinesins

Ping Xie,Shuo-Xing Dou,Peng-Ye Wang

Physics of RecA-mediated homologous recognition

Kevin Klapstein,Tom Chou,Robijn Bruinsma

Simple Growth Models of Rigid Multifilament Biopolymers

Evgeny B. Stukalin,Anatoly B. Kolomeisky

A Simple Cellular Automaton Model for Influenza A Viral Infections

Catherine Beauchemin,John Samuel,Jack Tuszynski

Mathematical modeling of filamentous microorganisms

Michele Bezzi,Andrea Ciliberto

Gene-history correlation and population structure

A. Eriksson,B. Mehlig

Mean field methods for cortical network dynamics

John Hertz,Alexander Lerchner,Mandana Ahmadi

Collective dynamics in phospholipid bilayers investigated by inelastic neutron scattering: Exploring the dynamics of biological membranes with neutrons

M. C. Rheinst？dter,C. Ollinger,G. Fragneto,T. Salditt

Response variability in balanced cortical networks

Alexander Lerchner,Cristina Ursta,John Hertz,Mandana Ahmadi,Pauline Ruffiot

Global organization of metabolic fluxes in the bacterium, Escherichia coli

E. Almaas,B. Kovacs,T. Vicsek,Z. N. Oltvai,A. -L. Barabasi

HighProbability determines which alternative hypotheses are sufficiently probable: Genomic applications include detection of differential gene expression

David R. Bickel

Reliably determining which genes have a high posterior probability of differential expression: A microarray application of decision-theoretic multiple testing

David R. Bickel

A Barrier Penetration Model for DNA Double Strand Separation

Ajit Kumar Mohanty

Complex dynamics of the biological rhythms: gallbladder and heart cases

Giovanni Imponente

Turbulence near cyclic fold bifurcations in birhythmic media

Dorjsuren Battogtokh,John J. Tyson

Behavior of susceptible-infected-susceptible epidemics on heterogeneous networks with saturation

Jaewook Joo,Joel L. Lebowitz

Space-irrelevant scaling law for fish school sizes

Hiro-Sato Niwa

A model of sympatric speciation through assortative mating

Franco Bagnoli,Carlo Guardiani

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