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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Statistical modeling of primary Ewing tumours of the bone

Sreepurna Malakar,Florentin Smarandache,Sukanto Bhattacharya

Low Degree Metabolites Explain Essential Reactions and Enhance Modularity in Biological Networks

Areejit Samal,Shalini Singh,Varun Giri,Sandeep Krishna,N. Raghuram,Sanjay Jain

Evidence of a universal power law characterizing the evolution of metabolic networks

Shalini,Areejit Samal,Varun Giri,Sandeep Krishna,N. Raghuram,Sanjay Jain

Cooperativity, sensitivity and noise in biochemical signaling

William Bialek,Sima Setayeshgar

Uniqueness of steady states for a certain chemical reaction

Liming Wang,Eduardo Sontag

Cloning, expression and purification of the general stress protein Yhbo from Escherichia coli

Jad Abdallah,Renee Kern,Abderrahim Malki,Viola Eckey,Gilbert Richarme

Finding mesoscopic communities in sparse networks

I. Ispolatov,I. Mazo,A. Yuryev

Computational core and fixed-point organisation in Boolean networks

L. Correale,M. Leone,A. Pagnani,M. Weigt,R. Zecchina

A new series of polyhedra as blueprints for viral capsids in the family of Papovaviridae

T. Keef,R. Twarock

Low energy states of a semiflexible polymer chain with attraction and the whip-toroid transitions

Yukitaka Ishimoto,Norio Kikuchi

The energy cost of protein messages lead to a new protein information law

Robersy Sanchez,Ricardo Grau

A hypothesis on the selective advantage for sleep

Emmanuel Tannenbaum

Parametric inference of recombination in HIV genomes

Niko Beerenwinkel,Colin N. Dewey,Kevin M. Woods

Tropical rainforest bird community structure in relation to altitude, tree species composition, and null models in the Western Ghats, India

T. R. Shankar Raman,N. V. Joshi,R. Sukumar

Symmetry and Dynamics in living organisms: The self-similarity principle governs gene expression dynamics

T. Ochiai,J. C. Nacher,T. Akutsu

Study the effects of metallic ions on the combination of DNA and histones with molecular combing technique

Yu-Ying Liu,Peng-Ye Wang,Shuo-Xing Dou,Ping Xie,Wei-Chi Wang,Hua-Wei Yin

Mechanical unfolding of RNA hairpins

Changbong Hyeon,D. Thirumalai

Free energy adopted stochastic optimization protein folding

Toshio Fukumi

Quantifying Influenza Vaccine Efficacy and Antigenic Distance

Vishal Gupta,David J. Earl,Michael W. Deem

Slow energy relaxation of macromolecules and nano-clusters in solution

Francesco Piazza,Paolo De Los Rios,Yves-Henri Sanejouand

Estimation of protein folding probability from equilibrium simulations

Francesco Rao,Giovanni Settanni,Enrico Guarnera,Amedeo Caflisch

Study of a model for the folding of a small protein

Andrea Nobile,Federico Rapuano

Predicting Secondary Structures, Contact Numbers, and Residue-wise Contact Orders of Native Protein Structure from Amino Acid Sequence by Critical Random Networks

Akira R. Kinjo,Ken Nishikawa

Comparative Analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans Protein Interaction Network

Ino Agrafioti,Jonathan Swire,James Abbott,Derek Huntley,Sarah Butcher,Michael P. H. Stumpf

Probabilistic methods for predicting protein functions in protein-protein interaction networks

Christoph Best,Ralf Zimmer,Joannis Apostolakis

Morphological complex networks: Can individual morphology determine the general connectivity and dynamics of networks?

Luciano da Fontoura Costa

SARS oubreaks in Ontario, Hong Kong and Singapore: the role of diagnosis and isolation as a control mechanism

Gerardo Chowell,Paul W. Fenimore,Melissa A. Castillo-Garsow,Carlos Castillo-Chavez

The Basic Reproductive Number of Ebola and the Effects of Public Health Measures: The Cases of Congo and Uganda

Gerardo Chowell,Nick W. Hengartner,Carlos Castillo-Chavez,Paul W. Fenimore,J. M. Hyman

Spontaneous flow transition in active polar gels

R. Voituriez,J-F Joanny,J. Prost

Variable selection from random forests: application to gene expression data

Ramon Diaz-Uriarte,Sara Alvarez de Andres

On the Statistical Law of Life

N. M. Pugno

Altruistic behavior pays, or the importance of fluctuations in evolutionary game theory

Angel Sanchez,Jose A. Cuesta,Carlos P. Roca

Species Abundances Distribution in Neutral Community Models

Z. Neda,M. Ravasz

Sociophysics Simulations III: Retirement Demography

Lotfi Zekri,Dietrich Stauffer

Learning intrinsic excitability in medium spiny neurons

Gabriele Scheler

Statistical analysis of simple repeats in the human genome

Francesco Piazza,Pietro Lio

Stochastic gene expression in switching environments

Martin Gander,Christian Mazza,Hansklaus Rummler

Biodiversity in model ecosystems, I: Coexistence conditions for competing species

Ugo Bastolla,Michael L？ssig,Susanna C. Manrubia,Angelo Valleriani

Sympatric Speciation in a Simple Food Web

K. Luz-Burgoa,Tony Dell,Toshinori Okuyama

A new model for the immune clonal networks

V. V. Gafiychuk,A. K. Prykarpatsky

Accelerating, hyper-accelerating, and decelerating probabilistic networks

M. J. Gagen,J. S. Mattick

Stationary distributions of a noisy logistic process

P. F. Gora

The Species Abundances Distribution in a new perspective

M. Ravasz,A. Balog,V. Marko,Z. Neda

Fluctuations in models of biological macroevolution

Per Arne Rikvold

Simulations of a mortality plateau in the sexual Penna model for biological ageing

Veit Schw？mmle,Suzana M. de Oliveira

Base pair interactions and hybridization isotherms of matched and mismatched oligonucleotide probes on microarrays

Hans Binder,Stephan Preibisch,Toralf Kirsten

The posterior-Viterbi: a new decoding algorithm for hidden Markov models

Piero Fariselli,Pier Luigi Martelli,Rita Casadio

Nonlinear Protein Degradation and the Function of Genetic Circuits

Nicolas E. Buchler,Ulrich Gerland,Terence Hwa

A toolkit for the construction of icosahedral particles with local symmetry axes

Reidun Twarock

Phi-values in protein folding kinetics have energetic and structural components

Claudia Merlo,Ken A. Dill,Thomas R. Weikl

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