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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Spectral representation: analyzing single-unit activity in extracellularly recorded neuronal data without spike sorting

Artur Luczak,Nandakumar S. Narayanan

The reaction-diffusion approach to morphogenesis

Rui Dilao

Controlled DNA compaction within chromatin: the tail-bridging effect

Frank Muehlbacher,Christian Holm,Helmut Schiessel

Telomere loss limits the rate of human epithelial tumor formation

Hermann B. Frieboes,James P. Brody

Cellular organization by self-organization : mechanisms and models for Min protein dynamics

Martin Howard,Karsten Kruse

Self-organized density patterns of molecular motors in arrays of cytoskeletal filaments

Stefan Klumpp,Theo M. Nieuwenhuizen,Reinhard Lipowsky

Movements of molecular motors: Ratchets, random walks and traffic phenomena

Stefan Klumpp,Theo M. Nieuwenhuizen,Reinhard Lipowsky

Dynamics of competing species in a model of adaptive radiations and macroevolution

Birgitte Freiesleben De Blasio,Fabio Vittorio De Blasio

Should you believe that this coin is fair?

William Bialek

An inversion in the wiring of an intercellular signal: evolution of Wnt signaling in the nematode vulva

Marie-Anne Félix

How to formulate membrane potential in a spatially homogeneous myocyte model?

A. J. Tanskanen,E. I. Tanskanen,J. L. Greenstein,R. L. Winslow

Positioning Crenarchaeal tRNA-Introns

Smarajit Das,Zhumur Ghosh,Jayprokas Chakrabarti,Bibekanand Mallick,Satyabrata Sahoo

Time Reversal of the Increasing Geometrical Progression of the Population of a Simple Biological Specie

Vladan Pankovic,Rade Glavatovic,Milan Predojevic

Bacteriophage-mediated competition in Bordetella bacteria

Jaewook Joo,Michelle Gunny,Marisa Cases,Peter Hudson,Reka Albert,Eric Harvill

Food Webs: Experts Consuming Families of Experts

A. G. Rossberg,H. Matsuda,T. Amemiya,K. Itoh

Physics of thick polymers

D. Marenduzzo,A. Flammini,A. Trovato,J. R. Banavar,A. Maritan

Coupled dynamics of RNA folding and nanopore translocation

Ralf Bundschuh,Ulrich Gerland

Explicit factorization of external coordinates in constrained Statistical Mechanics models

Pablo Echenique,Ivan Calvo

Attentional modulation of firing rate and synchrony in a model cortical network

Calin Buia,Paul Tiesinga

Egocentric Path Integration Models and their Application to Desert Arthropods

Tobias Merkle,Martin Rost,Wolfgang Alt

What thermodynamic features characterize good and bad folders? Results from a simplified off-lattice protein model

A. Amatori,J. Ferkinghoff-Borg,G. Tiana,R. A. Broglia

An irreversible growth model for virus capsid assembly

Stephen D. Hicks,C. L. Henley

Genome-wide discovery of modulators of transcriptional interactions in human B lymphocytes

Kai Wang,Ilya Nemenman,Nilanjana Banerjee,Adam Margolin,Andrea Califano

Non-extensive Trends in the Size Distribution of Coding and Non-coding DNA Sequences in the Human Genome

Th. Oikonomou,A. Provata

Solvent and mutation effects on the nucleation of amyloid $β$-protein folding

Luis Cruz,Brigita Urbanc,Jose M. Borreguero,Noel D. Lazo,David B. Teplow,H. Eugene Stanley

Participatory Ecosystem Management Planning at Tuzla Lake (Turkey) Using Fuzzy Cognitive Mapping

Filiz Dadaser Celik,Uygar Ozesmi,Asuman Akdogan

Vector space of DNA genomic sequences on a Genetic Code Galois Field

Robersy Sanchez,Eberto R Morgado,Ricardo Grau

Effect of pooling samples on the efficiency of comparative studies using microarrays

Shu-Dong Zhang,Timothy W. Gant

New symmetry in nucleotide sequences

M. A. Makarova,M. G. Sadovsky

Nucleation and the transition state of the SH3 domain

Isaac A. Hubner,Katherine A. Edmonds,Eugene I. Shakhnovich

Robustness in Gene Circuits: Clustering of Functional Responses

Mary J. Dunlop,Michael E. Wall

Computational Theory of Biological Function I

Ron Maimon

Extracellular-to-intracellular signal transfer via G-proteins

Gabriele Scheler

Application of Random Matrix Theory to Biological Networks

Feng Luo,Jianxin Zhong,Yunfeng Yang,Richard H. Scheuermann,Jizhong Zhou

Principles in the Evolution of Metabolic Networks

Hiroki R. Ueda,John B. Hogenesch

Optimal Spike-Timing Dependent Plasticity for Precise Action Potential Firing

Jean-Pascal Pfister,Taro Toyoizumi,David Barber,Wulfram Gerstner

Signal buffering in random networks of spiking neurons: microscopic vs. macroscopic phenomena

Julien Mayor,Wulfram Gerstner

Autoassociative Memory Retrieval and Spontaneous Activity Bumps in Small-World Networks of Integrate-and-Fire Neurons

A. Anishchenko,E. Bienenstock,A. Treves

Evolutionarily conserved human targets of adenosine to inosine RNA editing

Erez Y. Levanon,Martina Hallegger,Yaron Kinar,Ronen Shemesh,Kristina Djinovic-Carugo,Gideon Rechavi,Michael F. Jantsch,Eli Eisenberg

Cliques and duplication-divergence network growth

I. Ispolatov,P. L. Krapivsky,I. Mazo,A. Yuryev

Transient Information Flow in a Network of Excitatory and Inhibitory Model Neurons: Role of Noise and Signal Autocorrelation

Julien Mayor,Wulfram Gerstner

Functional Dynamics of PDZ Binding Domains: A Normal Mode Analysis

Paolo De Los Rios,Fabio Cecconi,Anna Pretre,Giovanni Dietler,Olivier Michielin,Francesco Piazza,Brice Juanico

Binding properties and evolution of homodimers in protein-protein interaction networks

Iaroslav Ispolatov,Anton Yuryev,Ilya Mazo,Sergei Maslov

Pattern formation in a stochastic model of cancer growth

Anna Ochab-Marcinek

Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density and telomere-specific effects

Peter F Arndt,Terence Hwa,Dmitri A Petrov

A Solvable Sequence Evolution Model and Genomic Correlations

Philipp W. Messer,Peter F. Arndt,Michael L？ssig

A Novel Lie Algebra of the Genetic Code over the Galois Field of Four DNA Bases

Robersy Sanchez,Ricardo Grau

Thermosynthesis as energy source for the RNA World: a new model for the origin of life

Anthonie W. J. Muller

Predator-prey cycles from resonant amplification of demographic stochasticity

A. J. McKane,T. J. Newman

Single Stranded DNA Translocation Through a Fluctuating Nanopore

O. Flomenbom,J. Klafter

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