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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Modeling epidemics on adaptively evolving networks: a data-mining perspective

Assimakis A. Kattis,Alexander Holiday,Ana-Andreea Stoica,Ioannis G. Kevrekidis

Combinatorics of Place Cell Coactivity and Hippocampal Maps

A. Babichev,D. Ji,F. Memoli,Y. Dabaghian

Brain Model of Information Based Exchange

James Kozloski

Two different modes of oscillation in a gene transcription regulatory network with interlinked positive and negative feedback loops

Rajesh Karmakar

On the Capacity of Point-to-Point and Multiple-Access Molecular Communications with Ligand-Receptors

Gholamali Aminian,Maryam Farahnak Ghazani,Mahtab Mirmohseni,Masoumeh Nasiri Kenari,Faramarz Fekri

Reduction of Alzheimer's disease beta-amyloid pathology in the absence of gut microbiota

T. Harach,N. Marungruang,N. Dutilleul,V. Cheatham,K. D. Mc Coy,J. J. Neher,M. Jucker,F. F？k,T.,Lasser,T. Bolmont

An Analytical Approach for Insulin-like Growth Factor Receptor 1 and Mammalian Target of Rapamycin Blockades in Ewing Sarcoma

Romeil Sandhu,Salah-Eddine Lamhamedi-Cherradi,Sarah Tannenbaum,Joseph Ludwig,Allen Tannenbaum

Decomposing variability in protein levels from noisy expression, genome duplication and partitioning errors during cell-divisions

Mohammad Soltani,Cesar Augusto Vargas-Garcia,Duarte Antunes,Abhyudai Singh

Dichotomous noise models of gene switches

Davit A. Potoyan,Peter G. Wolynes

Local versus Global Biological Network Alignment

Lei Meng,Aaron Striegel,Tijana Milenkovic

A role for ATP-dependent chromatin remodeling in the hierarchical cooperativity between noninteracting transcription factors

Denis Michel

Mobility Measurements Probe Conformational Changes in Membrane Proteins due to Tension

Richard G. Morris,Matthew S. Turner

Sequence-structure relations of biopolymers

Christopher Barrett,Fenix W. Huang,Christian M. Reidys

Spike-Threshold Variability Originated from Separatrix-Crossing in Neuronal State Space

Longfei Wang,Hengtong Wang,Lianchun Yu,Yong Chen

One-Dimensional Structural Properties of Proteins in the Coarse-Grained CABS Model

Sebastian Kmiecik,Andrzej Kolinski

Colloidal graphite/graphene nanostructures using collagen showing enhanced thermal conductivity

Soumya Bhattacharya,Purbarun Dhar,Sarit K Das,Ranjan Ganguly,Thomas Webster,Suprabha Nayar

Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer

Sriganesh Srihari,Jitin Singla,Limsoon Wong,Mark A. Ragan

Predicting diverse M-best protein contact maps

Siqi Sun,Jianzhu Ma,Sheng Wang,Jinbo Xu

A formulation of the channel capacity of biochemical signaling cascades

Tatsuaki Tsuruyama

The channel capacity and information density of biochemical signaling cascades based on Tsallis q-statistics

Tatsuaki Tsuruyama

Dynamic curvature regulation accounts for the symmetric and asymmetric beats of Chlamydomonas flagella

Pablo Sartori,Veikko Geyer,Andre Scholich,Frank Jülicher,Jonathon Howard

A stochastic model for tumor heterogeneity

Giuseppina Simone

DUDE-Seq: Fast Universal Denoising of Nucleotide Sequences

Byunghan Lee,Taesup Moon,Sungroh Yoon,Tsachy Weissman

Ferromagnetic and antiferromagnetic order in bacterial vortex lattices

Hugo Wioland,Francis G. Woodhouse,J？rn Dunkel,Raymond E. Goldstein

Modeling the Multiple Myeloma Vicious Cycle: Signaling Across the Bone Marrow Microenvironment

Catherine E. Patterson,Bruce P. Ayati,Sarah A. Holstein

Graded, Dynamically Routable Information Processing with Synfire-Gated Synfire Chains

Zhou Wang,Andrew T Sornborger,Louis Tao

Requirements for efficient cell-type proportioning: regulatory timescales, stochasticity and lateral inhibition

Benjamin Pfeuty,Kunihiko Kaneko

Mathematical Modeling of Myosin Induced Bistability of Lamellipodial Fragments

Stefanie Hirsch,Angelika Manhart,Christian Schmeiser

Adaptability of non-genetic diversity in bacterial chemotaxis

Nicholas W Frankel,William Pontius,Yann S Dufour,Junjiajia Long,Luis Hernandez- Nunez,Thierry Emonet

An Asymptotic Analysis of a 2-D Model of Dynamically Active Compartments Coupled by Bulk Diffusion

J. Gou,M. J. Ward

Shape dynamics of growing cell walls

Shiladitya Banerjee,Norbert F. Scherer,Aaron R. Dinner

Evolution of cooperation in a particular case of the infinitely repeated Prisoner's Dilemma with three strategies

Irene Nú？ez Rodríguez,Armando G. M. Neves

Effect of bursty influx on the switching dynamics of stochastic populations

Shay Be'er,Metar Heller-Algazi,Michael Assaf

Zebrafish collective behaviour in heterogeneous environment modeled by a stochastic model based on visual perception

Bertrand Collignon,Axel Séguret,José Halloy

Prey cannibalism alters the dynamics of Holling-Tanner type predator-prey models

Aladeen Basheer,Emmanuel Quansah,Schuman Bhowmick,Rana D. Parshad

Extinction dynamics of a discrete population in an oasis

Stefano Berti,Massimo Cencini,Davide Vergni,Angelo Vulpiani

Highly Efficient siRNA Delivery from Core-Shell Mesoporous Silica Nanoparticles with Multifunctional Polymer Caps

Karin Moeller,Katharina Mueller,Hanna Engelke,Christoph Braeuchle,Ernst Wagner,Thomas Bein

Cortical microtubule nucleation can organise the cytoskeleton of $Drosophila$ oocytes to define the anteroposterior axis

Philipp Khuc Trong,Hélène Doerflinger,J？rn Dunkel,Daniel St. Johnston,Raymond E. Goldstein

On Tree Based Phylogenetic Networks

Louxin Zhang

piecewiseSEM: Piecewise structural equation modeling in R for ecology, evolution, and systematics

Jonathan S. Lefcheck

Stationary states and spatial patterning in an $SIS$ epidemiology model with implicit mobility

J. M. Ilnytskyi,Y. Kozitsky,H. I. Ilnytskyi,O. Haiduchok

Stability of Underdominant Genetic Polymorphisms in Population Networks

áki J. Láruson,Floyd A. Reed

On the parameters affecting dual-target-function evaluation of single-particle selection from cryo-electron micrographs

Zhou Yu,Wei Li Wang,Luis R. Castillo-Menendez,Joseph Sodroski,Youdong Mao

Prediction of Metabolic Pathways Involvement in Prokaryotic UniProtKB Data by Association Rule Mining

Imane Boudellioua,Rabie Saidi,Maria Martin,Robert Hoehndorf,Victor Solovyev

Pseudo energy wells in active systems

Raman Sheshka,Pierre Recho,Lev Truskinovsky

Fundamental activity constraints lead to specific interpretations of the connectome

Jannis Schuecker,Maximilian Schmidt,Sacha van Albada,Markus Diesmann,Moritz Helias

On the low dimensional dynamics of structured random networks

Johnatan Aljadeff,David Renfrew,Marina Vegué,Tatyana O. Sharpee

Modelling Invasion Dynamics with Spatial Random-Fitness due to Microenvironment

Venkata. S. K. Manem,Kamran Kaveh,Mohammad Kohandel,Siv Sivaloganathan

The Prisoner's dilemma as a cancer model

Jeffrey West,Zaki Hasnain,Jeremy Mason,Paul K. Newton

Detection and Visualization of Differential Exon and Splice Junction Usage in RNA-Seq Data with JunctionSeq

Stephen W. Hartley,James C. Mullikin

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